Gene Rpic_3777 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic_3777 
Symbol 
ID6284862 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12J 
KingdomBacteria 
Replicon accessionNC_010678 
Strand
Start bp15460 
End bp17844 
Gene Length2385 bp 
Protein Length794 aa 
Translation table11 
GC content67% 
IMG OID642618278 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001892320 
Protein GI187925975 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.410783 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value0.29106 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCACAT CTGTATCCGG CCTGCTGGCA CCGGCACACC GCGTGCCGCA GGCGCGTGTC 
GTTTTCTTTG GCGGGAAGCT TCTCGACGTG TTCTGGATTG ATGATCCGTT GACGGGAACA
CGCTTGCACG TCAGCGCAGC AGCGCAGACC TGGGGCGTAC GGGCTGAGTC CTTGTGTGGC
GATCGCGAGC AGTGGCTGGC CCACGTGCAT CCCGACGACC ACGCGGCCCT GCGCGCGGCA
TGGGACGGCC TGGCTCGCGG GCAGGACTTC GTGCTCGAGT ACCGGTGGAT CGGCGTCGAT
CACCGGGAGC AGCGCGTGCG CGAGCGTGGC TACCTGATGC CGTCGCCCAA CGGCGGGCCC
GCCCACGCCG TCGGCGTGAT CGAAGACGTG ACGCAGCGCC AGCAAACGCT GACCGCACTC
ACCGAATCGG AATTCCAACT GCAGTGGTTG ACCGAGAGCG TGCCGTTTCC GCTGGTGCAG
ATCGATCCGG AGCACCGCGT GCGCTTTGCG AACCGGGCGT ATGCGCAGCG CTTTGGCATG
CTGCCCGACG CGGTGGTTGG TTCGCATCTG CGGGCGGTGA TGGGCGAGGC AGCGTATGCG
CGCATCCTCG CCCATCTGGG TGAGGGCTTC GCGGGCCGGC GCGTCGATTT CGAAATCGAA
CTGCCGTACC CGGAGGACAT TGGCTCGCGC TTCGTCCACG CAGCCTATTC GCCGCAACAG
GGGCCCGACG GGAGCGTGCA GGCCCTCGTA TGTCTGGAGG AGGACATCAC CGAGCGCAAG
GAGGCCGAGC GCGAGCGCTA CCGCCACCAG CGCGAATTCG TCACGCTTGT CGAGAATGCA
CCGGACGTGA TCGCACGGCT TGATCGGGAC CTGCATTGCG TCTACGTCAA CTGCGCGGTG
ATCCATGCCT TTGGTGTGAC GCCGGCCGCC ATGACAGGCC GCACGCTGTC GGCATCACCC
TTGCCCGCGA CGGTTGCCGG CCCGCTGGAC GCAGCGGCGC GGCTGGCATT CACCACGGGC
GCCGAGCAGA CGCTCACGCT GCACCTGGAT GCCGGGGAGC GTCGCACCGG CATCGCACAT
TACAACGTGC GCGTGATTCC AGAGGAGGAC CGCACTGGCA CCATCGAATC TGCGATGCTG
ATCGTGTACG ACGTCACCGA GCGCACCGAG GCGGAGCGCG AACGCGATGC GCTGTTGCTG
CGCGAGCAGA CGGCGCGTGC GCACGCCGAG GCGGCCACCC TGGCGCGCGA CCAGTTTCTC
GCAGTGGTGT CGCACGAACT GCGCTCACCG CTCAACGGGA TCCAGAACTG GACCTATGTG
CTGGAGAACC AGTTGTCTGA CGGCTCACCG CTCGTGCAAC GCGCGCTGGC CGGCATCAAG
ACCGGCGTAG AGCAGCAGGT ACGGCTGATC GAGGACCTGC TTGACGCTAC GCGCGTCATG
AGCGGCAAGT TGCGCCTGAC GCGCGAGCCA TTCGTTCTGA GCCTCGCGAT CGAGCGTGCG
CTCAACAGTG TGCGCGCGCT GGCTGCGGAG CGCGGCATTA CGCTGCATGT GGCCAGCCTG
CTTGAAGCGC ATGAAATCGA TGGTGACGCA GATCGCGTCG AGCAGATCGT CTGGAACCTG
CTGACCAACG CCATCAAGTT CACGCACGAA GGCGGTGATG TATGGCTGTC AGCGGACCTC
GTGGGCGAGG TCGCCCGGAT CGTGGTGCGT GACAACGGGC GCGGCATCGG GCCCGCATTC
CTGCCCTATC TGTTCGATCC ATTCCGGCAG GCCGATGGTG CGCACACCCG CCGCACCGGC
GGTCTCGGCC TGGGGCTTGC GCTGGTCAAG CGCCTGACCG AGCTGCATGG CGGACGCGTG
CATGCCCATA GCGATGGCGA GCGCAGCGGC GCGGTCTTCA CGGTTTATCT GCCGCTGCAT
GCCGGAGCCG AGTTGACACC GCCGCTCGCC GAGGACCTTG CGCGCAGCGG CCCGCTTCCG
TCGCTGGCGG GCTTGCGTGT GCTGCTCGTC GATGATCAGC AAGACGCGCG CGATGCGCTT
GCCACGCTGC TGGCGCAAGT CGGTGCCGAC GTGGCCAGCG TGGGGTCGGG CCAGGAAGCC
ATGACGCAGC TCGACACGTG GGGTGTGCCG GCGCGGCCGC GGGCCGTGGT GTGCGACATC
GCCCTGCCTG ATGAAGACGG TTACGCGATC CTGCAGAAGA TCCGTACCTG GGAGCGGCTG
CACGTGCCAG CGGGCGCCTC CCCAATCGCA GCCATTGCCC TGACGGCCTT TGCCCAGCCA
GACGATCGCG CGCGTGCGCT GGCGAGCGGT TTTCAGGAGC ACCTGGTCAA GCCCGTGTCG
CCTTATGACC TGGTGCGTAC GTTGCGCAAC CTGGCCGCGC CCTGA
 
Protein sequence
MSTSVSGLLA PAHRVPQARV VFFGGKLLDV FWIDDPLTGT RLHVSAAAQT WGVRAESLCG 
DREQWLAHVH PDDHAALRAA WDGLARGQDF VLEYRWIGVD HREQRVRERG YLMPSPNGGP
AHAVGVIEDV TQRQQTLTAL TESEFQLQWL TESVPFPLVQ IDPEHRVRFA NRAYAQRFGM
LPDAVVGSHL RAVMGEAAYA RILAHLGEGF AGRRVDFEIE LPYPEDIGSR FVHAAYSPQQ
GPDGSVQALV CLEEDITERK EAERERYRHQ REFVTLVENA PDVIARLDRD LHCVYVNCAV
IHAFGVTPAA MTGRTLSASP LPATVAGPLD AAARLAFTTG AEQTLTLHLD AGERRTGIAH
YNVRVIPEED RTGTIESAML IVYDVTERTE AERERDALLL REQTARAHAE AATLARDQFL
AVVSHELRSP LNGIQNWTYV LENQLSDGSP LVQRALAGIK TGVEQQVRLI EDLLDATRVM
SGKLRLTREP FVLSLAIERA LNSVRALAAE RGITLHVASL LEAHEIDGDA DRVEQIVWNL
LTNAIKFTHE GGDVWLSADL VGEVARIVVR DNGRGIGPAF LPYLFDPFRQ ADGAHTRRTG
GLGLGLALVK RLTELHGGRV HAHSDGERSG AVFTVYLPLH AGAELTPPLA EDLARSGPLP
SLAGLRVLLV DDQQDARDAL ATLLAQVGAD VASVGSGQEA MTQLDTWGVP ARPRAVVCDI
ALPDEDGYAI LQKIRTWERL HVPAGASPIA AIALTAFAQP DDRARALASG FQEHLVKPVS
PYDLVRTLRN LAAP