Gene Bphyt_7227 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_7227 
Symbol 
ID6277858 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp3612132 
End bp3613157 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content62% 
IMG OID642618247 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_001890883 
Protein GI187921851 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCAACC TCGCGAGACG CACCCTGTTG CGTGCGGCGG CCGCTGTGCC GGTAGCCGGC 
GCGCTGGGCT TTCCGGCAAT CGTGCGCGCG GCGTCCGGCC CGGAGTTCGT GTTCAAGTAC
GGCAACAACC TGCCGCTTAC GCATCCGCTG AACGTGCGCT CGCAAGAGGC CGCGAATCAG
ATCAAGGAGG CGTCGAAAGG GCGCATGGAG ATCCGGATAT TCCCTAACAA CCAGTTGGGC
GGCGACACCG ACATGCTCGC GCAGGTGCGC AGCGGCGGCA TCGAAATGTT CACGCCGTCG
GCGTTGGTGG TGTCGACGCT CGCACCGTCG GTTGCGATCA ACGCGGTGGG CTTCGCGTTC
AGCGACTACA ACCAGGTCTG GGGCGCCATG GACGGCAAGC TCGGCGCATA CGTGCGCGCC
GCGATGCAGA AGGCCGGGCT CGAATCGTTC GAAAAGATGT GGGACAACGG CTTTCGTCAA
ACCACCACGA GCAATGGTCC CATTACGAGT GCGCAGACCA TGCGCGGTCT GAAGATTCGC
GTGCCGGTGA GTCCGCTGAG CATCGATATG TTCAAGGGAC TCGGCGCTTC GCCGACCAGC
CTGCAATTCA GCGAGGTCTA TTCGTCGCTG CAAACGCATA TCGTCGATGC GCAGGAAAAT
CCGCTGCCGA TCGTGCAGGT CGCGAAACTC TACGAAGTGC AGAAGTACTG CTCGCTCACC
AATCACATGT GGGACGGCTA CTGGTTCGTG CTGAACCCGC GCGCCTGGCA GCGCTTGCCG
AAGGATCTGC AGGGCATTGC CAGCGATGCG TTCAACCAGT CGGCGTTGAA GCAACGTGAA
GACGTGCGCA AGCTGAACGA TGCGGCGGTC GCGGATTTGC AAAGCAAGGG CCTGTCGATC
AACCGTCCCA CGCCGGACAC ATTCCGCGCG GCGCTGCGTC AGGCCGGCTT CTACGCCGAA
TGGAAGAGCA AGTTCGGCAA TCAGGCGTGG GACCTCCTCG AACAGTCGGT CGGCAAGCTG
GCTTGA
 
Protein sequence
MTNLARRTLL RAAAAVPVAG ALGFPAIVRA ASGPEFVFKY GNNLPLTHPL NVRSQEAANQ 
IKEASKGRME IRIFPNNQLG GDTDMLAQVR SGGIEMFTPS ALVVSTLAPS VAINAVGFAF
SDYNQVWGAM DGKLGAYVRA AMQKAGLESF EKMWDNGFRQ TTTSNGPITS AQTMRGLKIR
VPVSPLSIDM FKGLGASPTS LQFSEVYSSL QTHIVDAQEN PLPIVQVAKL YEVQKYCSLT
NHMWDGYWFV LNPRAWQRLP KDLQGIASDA FNQSALKQRE DVRKLNDAAV ADLQSKGLSI
NRPTPDTFRA ALRQAGFYAE WKSKFGNQAW DLLEQSVGKL A