Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_7195 |
Symbol | |
ID | 6279733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 3582304 |
End bp | 3584238 |
Gene Length | 1935 bp |
Protein Length | 644 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 642618215 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001890851 |
Protein GI | 187921819 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 48 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTTCA GCGAACCAAG GTCTCCATTT TTCAAGTGGG TCGTCTCTTC CTCTCAGGAT TTGAGCGCGG ATAATCGCCA GATATTGCTT GCCAATCTGT TCACGCGAAC CGCATCGATC GTGTTCGCGT CGATCTGTGA AATCAGCGTC TGCGCCACCG CTTACTACCT TTATCCCAAG GCTCTTTACG CGAGCTGGGG CAGTGCCGTT GTTGCATTGC TGATTGCCCG GCTCGTATTG ATCTGGTTGT GCTGCTCGCG CAGCGCCAAG GGTCAGCCGA CTCCTACCTC CGCGTTTCTG TTTGCGAGCC TCCTCTGGAG CGTACTGTTC GGCTACGGCA CCTTGCTGTG CAATATCAGT GGAGACCAGA CACTGTTCCT GCTTGGCAAC GTTTGCGCCG TGGGCGTTAT CGGCGGATTG GCCGGACGTA ATGCGGGTAC CCCTCGGCTC GTATTGCTGC AGATCACGTT CATTCTCGGG TTGCTGGCTG CCGGGGCGGC GCTGTCGCCC GGCTCCGGCA AACTGGTGCT GCTTTTCCAG GCGCCGTTCT GCGCCGCCGG GTTCTTTACG GTTGCGCTGC GCAGCAATCG CGACACGGTC GCGTTGCTTC TGGCGCGGGA AAACAGCCAC CGGCTCGCCC ATCACGACAG CCTCACCGGT TTGCCCAATC GCGCGCGTAT CAGTGAACTG CTGCTCGAAC GCACGGAGAT GGGCGCGCTG CGTAAAGACC AATCGTTCGC TGTTCTACTG ATCGATCTGG ATGGATTCAA GGCCATCAAT GACAGCCTGG GCCATGCCGC CGGCGATCAG ATCCTTCAGG AGGCGGCAAT TCGCTTGCGT GAAGTGTTGC CGAGCGGCGA TCTCGTAGGA CGCCTGGCCG GCGATGAGTT CGTGGCGCTT TCCGATGGCA CGGGGCAGGC TCGCGACGTC CGCATTCTGG CGGACCGCAT CGTAAAGACT TTGGCGCGCC CGTTCGCGCT GCGCGAGGCG CTGGTGCATA TCGGCGCGAG CGTGGGTGTC TCGCTTTATC CAGAGCACGC GAAAACCGGC CCGCAACTGC TGATTTGCGC CGACCGCGCG TTGTATGCCG TGAAGCGCAG CGGCAAAAGC GCATTCGCTA TTTTCGACGC GGCGAAGCAC GCGTCGGATG AAAGCCTGAG TCTTCTGCGC AGCGATCTGG AAGGCGCGCT GCATTCGTTC AGCGGTTTGC GCATGGAGTA CCAGCCCATC GTCGATCTCA GCAGCGGTGC GGTGACCGGT CGCGAGGCGC TGATGCGCTG GACCCACCCC ACGCGCGGCG AACTGTCGCC GTCCGCGTTC ATTCCCACCG CTGAACGTAC GGGCCTCATT CTGTCCTTGG GCGAGTGGGC TTTGCTGCAA TCGTGCAAGG AAGCGGTGAC GTGGCGAGAC AAAGTCACCG TCGCCGTGAA TGTATCGCCG GTGCAATTGC GGGAGGAGTC GTTTGCTTCG ACCGTTTCGG CGATTCTCCG CAAGACGAAG CTTCCGCCGC AACGCCTGAA TATCGAGGTC ACGGAGACGG TGCTGCTGGA CGACGATGTC GTGACCCGGC GCAATGTCGG CAGGCTGCGT GCGTTAGGCA TCGGTCTCGC GCTCGACGAT TTCGGCACAG GCTTTTCGAC CATGTCGACG CTCGTGCGCT TTTCGTTCGA CAAGCTCAAG ATCGATAGCT CGTTCGTCAA GGAGTCCGTG CATCGTCGAG AATCGGCGGC GGTAGTGCGC GGGATCGTCG CGTTGGCGCG GGAAATCGGC ATACCGACTA CGGCTGAAGG CATCGAGACG CAAGAGCAGC TGGACTTCGT GCGCGTATGC GGATGTACGC ATGCTCAAGG CTTTCTGCTC GGCAAGCCGG TGCAAAGCCA CGAGATTGCG CGGATCGAAG AAAAGGTTGC CGCGCATTCC GCGGATAAAG AATGA
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Protein sequence | MAFSEPRSPF FKWVVSSSQD LSADNRQILL ANLFTRTASI VFASICEISV CATAYYLYPK ALYASWGSAV VALLIARLVL IWLCCSRSAK GQPTPTSAFL FASLLWSVLF GYGTLLCNIS GDQTLFLLGN VCAVGVIGGL AGRNAGTPRL VLLQITFILG LLAAGAALSP GSGKLVLLFQ APFCAAGFFT VALRSNRDTV ALLLARENSH RLAHHDSLTG LPNRARISEL LLERTEMGAL RKDQSFAVLL IDLDGFKAIN DSLGHAAGDQ ILQEAAIRLR EVLPSGDLVG RLAGDEFVAL SDGTGQARDV RILADRIVKT LARPFALREA LVHIGASVGV SLYPEHAKTG PQLLICADRA LYAVKRSGKS AFAIFDAAKH ASDESLSLLR SDLEGALHSF SGLRMEYQPI VDLSSGAVTG REALMRWTHP TRGELSPSAF IPTAERTGLI LSLGEWALLQ SCKEAVTWRD KVTVAVNVSP VQLREESFAS TVSAILRKTK LPPQRLNIEV TETVLLDDDV VTRRNVGRLR ALGIGLALDD FGTGFSTMST LVRFSFDKLK IDSSFVKESV HRRESAAVVR GIVALAREIG IPTTAEGIET QEQLDFVRVC GCTHAQGFLL GKPVQSHEIA RIEEKVAAHS ADKE
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