| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7172 |
|---|
| Symbol | |
|---|
| ID | 6278116 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 3565185 |
|---|
| End bp | 3566621 |
|---|
| Gene Length | 1437 bp |
|---|
| Protein Length | 478 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618193 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001890829 |
|---|
| Protein GI | 187921797 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCTT CGTCATCCGC CAGCGCACAC GCCGGCGCGT CCTCGCTGAT TACCTCGCTG
GTCGCTGCCG CGCTGTTCAT GGAAAACCTC GACGGCTCGA TTATCGCAAC CGCGCTGCCG
CAAATGGCGC ATTCGTTTCA TGTCACGCCC GTCGAACTGA GCGTCGGCAT CACCTCGTAT
CTGTTGACGC TCGCGGTATT CATCCCGATC AGCGGCTGGA TTGCCGACTG GGCCGGCGTG
CGCACGGTGT TCACCGCGGC GCTTGCAATC TTCACCGTCG CATCGGTGCT GTGCGGATTG
ACCGACAACC TCGTCGAATT CACCGGCGCG CGGATTTTGC AAGGTATCGG CGGCGCGATG
ATGGTGCCGG TCGGGCGCCT TGCCGTATTG CGCGCCACGC CCAAAGAAGG CCTGATGCGT
GCGGTCTCCA TCATCACGTG GCCCGGGTTG GTCGCACCCG TTCTCGGACC GCCGCTCGGC
GGCTTCATTA CGACGTACTC GTCGTGGCGC TGGATCTTCT ATCTGAACGT GCCGCTCGGA
CTCGCGGGCG TGGTGTTGGC GTGGCGCTTC ATCAGCGCGG AACGCGACAC GGATCGTCGT
CCGTTCGACA TGCTGGGTTT TGTGCTGACG GGCGTCGCGG GCACCTCGGT GATGTACGCG
ATGGAGGCAA TCGGCCGTGT GGACTCCTCG TGGCGTATTG CGCTGGTATT TCTCGCAATC
GGTCTCGCGG CTTGCGCGGG AGCGTGGTTT CATCTGCGAC GCTGCACGCA CCCGATGGTC
GATCTGTCGG CGTTCCGGAT CAAGACGTTC ATGGTGGCGA TCGGCGGCGG CTCGCTGTTC
CGGATTGCGA TCGGCTCGGT GCCGTTTCTA CTGCCGCTGA TGTTTCAGGT CGGCTTCGGC
ATGAATCCGT TTCAGTCGGG CTTGCTGACG CTTGGCGTAT TCGCCGGCAA TCTGTCGACG
AAGCTCGTCA CGACGCGGAT CTTGCGGCGC TTCGGCTTTC GCTCCGTGCT TCTCTACAAC
GGCGCGTTCG CCGCGGTGAC GCTGGCGAGC ATGAGTCTGC TCACGGCCTC CACGCCATAT
GGATGGATCC TCTTCGCGCT ATTCGTCAGC GGCGTCGCGC GGTCGTTGCA ATTCACGGCG
ATCAATACGC TCGGTTTCGC GGATGTGCCG AAGCAGCAGA TGAGCGGCGC GTCGACCTTA
TCGAGCACCT TGGGTCAGAT GACAATGGGC ATGGGCGTCG CGGCCGGCGC AATCGCATTA
CGGATCGCCG CATGGTGGCA TGGACACGAT GGGCAAACAT TGGCGCCGGC TGATTTCACC
ATCGCGTTTC TGGTCATGGC GGCATTGAGC GTGATCGCGG TAGTCGATGT TATTTCGTTG
TCGCCCGACG CCGGCGCGCA CGTCAGCGGA CATCGGCCAG CGGGCGAGAA GTCGTGA
|
|---|
| Protein sequence | MSASSSASAH AGASSLITSL VAAALFMENL DGSIIATALP QMAHSFHVTP VELSVGITSY
LLTLAVFIPI SGWIADWAGV RTVFTAALAI FTVASVLCGL TDNLVEFTGA RILQGIGGAM
MVPVGRLAVL RATPKEGLMR AVSIITWPGL VAPVLGPPLG GFITTYSSWR WIFYLNVPLG
LAGVVLAWRF ISAERDTDRR PFDMLGFVLT GVAGTSVMYA MEAIGRVDSS WRIALVFLAI
GLAACAGAWF HLRRCTHPMV DLSAFRIKTF MVAIGGGSLF RIAIGSVPFL LPLMFQVGFG
MNPFQSGLLT LGVFAGNLST KLVTTRILRR FGFRSVLLYN GAFAAVTLAS MSLLTASTPY
GWILFALFVS GVARSLQFTA INTLGFADVP KQQMSGASTL SSTLGQMTMG MGVAAGAIAL
RIAAWWHGHD GQTLAPADFT IAFLVMAALS VIAVVDVISL SPDAGAHVSG HRPAGEKS
|
|---|
| |