| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7151 |
|---|
| Symbol | |
|---|
| ID | 6279182 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3541616 |
|---|
| End bp | 3543280 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618173 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001890809 |
|---|
| Protein GI | 187921777 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 32 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.478249 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTTCCG TCCGTAATGT CACGCTGCGC CGTGGCGTCA ATGTCGTACT CGATAGCGCG
TCCGTCACCT TCACCCCCGG CGAAAAGATT GGCCTTGTCG GCCGCAATGG CGCCGGCAAA
TCGTCCTTCT TCGGCCTTCT CAACGGCACG CTGCACGAAG ACAGCGGCGA ATTCTCGATT
CCCGCTGCGT GGAAGATGGG CCAGGTCGCG CAGGAAATGC CGGAGACCGA GCAGAGTGCA
ACCGACTTCG TCATCGACGG TGACACCGTA CTGCTAGCCG CGCAGGCCGA AGTAGCCGCC
GCCGAGGCCA GCGACGACGG CATGCGCATG GCGCACGCCT ACATGGCCCT GCACGACGCC
GGCGCACATG ACGCTCCCGC GCGTGCCCAG GCGCTGATCC TGGGCCTGGG TTTCAGTACC
GCGCAGCTCA GCCAGCCGGT CAACAGTTTC TCCGGCGGCT GGCGCATGCG GCTGCAACTG
GCGCGCGCGC TCATGTGCCC GTCCGACTTG CTGTTGCTCG ACGAGCCGAC CAATCACCTC
GACCTCGACG CGCTGGTCTG GCTGGAAGCG TGGCTCAAGC GCTATCAAGG AACCCTGGTC
GTGATCAGCC ACGATCGCGA GTTCCTCGAT GCGGTGACGC AAGTGACGGT GCACGTCGAC
AACGCCAAGC TCGTGCGTTA TGGCGGCAAC TACAGCAAGT TCGAAGACAT GCGTGCTGAG
CAACTGCTGT TGCAGCAGGC CGCGATGGCG AGGCAAGCGG ACAAGATCGC CCACCTGCAG
AAATTCATCG ACCGTTTCAA GGCCAAGGCC TCGAAGGCGA AGCAGGCGCA GAGCCGGGTC
AAGGCGCTCG AACGCATGGA GAAGATCGCG CCGGTGCTTG CCGATGCGGA GTTCACCTTC
GAGTTCAAGG AACCGCTCAA CGTCCCGAAC CCATTGTTGT CGATGCTGGA CGCGAGCTTC
GGCTACGCGG CGCCCACCGA CGCGCCGCCG GGCACGCCGC CGACGGTCAT CGTGCGGGGC
ATCAACCGCT CCGTGCTGGC CGGGCAGCGC ATCGGCATTC TCGGTGCCAA CGGCCAGGGC
AAGTCCACTT TGGTGAAGAC GGTGGCGCAC GAACTGGCGC CGATTGCCGG CGAAATCAGC
GAAGGTAAAG GCCTGAACAT CGGTTACTTC GCACAGCAGG AACTCGACGT GCTGCGTCCT
CTCGACACGC CGATGGAACA CATGATCCGC CTTGCCAAGG ACACGTCTGC GCACATGCGT
GCGCCCGGCC AGAGCGGCAC CGAACAATCG CTTCGCACCT TCCTCGGCAC CTTCAATTTT
AGCGGCGACA TGGTTCATCA GGCGGTCAGC ACGATGAGCG GCGGCGAAAA AGCGCGGCTC
GTGTTGTGCA TGATCGTGTG GCAGCGCCCT AACCTGCTGC TGCTCGACGA GCCGACCAAC
CACCTCGACC TCGCCACACG CGAAGCGCTA GGCATGGCGC TAAACGAATT CGAAGGCACC
GTAATGCTGG TCAGTCACGA CCGGTCGCTA TTGCGCGCGG TGTGTGACGA GTTCTGGCTT
GTCACCAAGG GTGGCGTCGA GCCCTTCGAC GGCGATCTGG ACGATTACCA GCAGTTCCTG
CGCGACGAAG CCCGTCGCAT GCGCGAGCAG GCTGCGGGAC AGTAA
|
|---|
| Protein sequence | MISVRNVTLR RGVNVVLDSA SVTFTPGEKI GLVGRNGAGK SSFFGLLNGT LHEDSGEFSI
PAAWKMGQVA QEMPETEQSA TDFVIDGDTV LLAAQAEVAA AEASDDGMRM AHAYMALHDA
GAHDAPARAQ ALILGLGFST AQLSQPVNSF SGGWRMRLQL ARALMCPSDL LLLDEPTNHL
DLDALVWLEA WLKRYQGTLV VISHDREFLD AVTQVTVHVD NAKLVRYGGN YSKFEDMRAE
QLLLQQAAMA RQADKIAHLQ KFIDRFKAKA SKAKQAQSRV KALERMEKIA PVLADAEFTF
EFKEPLNVPN PLLSMLDASF GYAAPTDAPP GTPPTVIVRG INRSVLAGQR IGILGANGQG
KSTLVKTVAH ELAPIAGEIS EGKGLNIGYF AQQELDVLRP LDTPMEHMIR LAKDTSAHMR
APGQSGTEQS LRTFLGTFNF SGDMVHQAVS TMSGGEKARL VLCMIVWQRP NLLLLDEPTN
HLDLATREAL GMALNEFEGT VMLVSHDRSL LRAVCDEFWL VTKGGVEPFD GDLDDYQQFL
RDEARRMREQ AAGQ
|
|---|
| |