| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7071 |
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| Symbol | |
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| ID | 6279591 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3452657 |
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| End bp | 3456139 |
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| Gene Length | 3483 bp |
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| Protein Length | 1160 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642618094 |
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| Product | YD repeat protein |
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| Protein accession | YP_001890730 |
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| Protein GI | 187921698 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAAGTCA CCGATGGCAT TGCGGCGCGT CGCGCGCTGC TGCGCCCGTT CATCCTGTCT
TTCTTTATGC TGCTCTCGTG GTTTGTGGTG CCGCATGCGC ATGCAGAGTG CTTTGACGAT
TACGTGTCGA ATGGCGCCTA CCCGACAGAT CCAAACTGTG GCTTCCTTGC GGCCAGCGCT
AATTTCAAGT CGGGCTTTGC TTGTGGCGAG CCCTTTACGA TTGCATCCTA TTGTGGCGGA
GCATCCGGCG GTACGACGGT TGAACCGATC TCTCCTGATG ACACCGTCAC CCTCGACGGC
GATGGCACCG GCGGTCAGCC GGGAGGCTCG GACGGTTCGG GAGGCTGCAG CGGCGGTGAT
GCGACGGCGG GTTGCGGAAG TAGCACGTCC GGCGGCGATC CAGTCAGGTT GTACACGGGT
CAGTTCCACC TGGTTGCCCA TGATTTGCAT GTTGCCGACA CGATCGCGCT GGACCTCGCC
CGCGTTTATC GTAGCAGCGC TTACGACACA TCTGGCAGGC CGATGGCCGG CGCATTCGGC
ATTGGCGCGA CGTTCAATTA CGATAGCTAT CTGACGGTGA GCGCAGCAGA CAGCAATAAT
CTGCGGCAGC TTATTCAACT TTATCTGCCC AGTGGAATCC ATGTTCCGTT CACTCTTCGT
GCCGGCACCA GCGCAACTTG GGACGACCTG ACAAGCGCAG GCGAGTTCTA CCGTGGCAGC
ATTACCGGCA ACGGCACGAC CAAGTTGCTG ACCCTGCGCG ACGGCCACAC GATGCAGTTC
ACGATGTTCG CCGGCCTTTA TCGCCTGACC CGTGTGCAGG ACCGCAACGG CAACACGGTC
GCCATCAACC GAAACAGCAG CACCGGCGCG ATCACGGGCA TCAACTGTCC TAATGGACGT
GCGCTAACAT TTGCGTCGAT TGTCGGTGCG CGCGGTACGC CACTCGTCTC GCGCATCTCC
GACCCGTTGA ACCGCCAGGT GAACTACCAG TACGACGGTC AGGACCGCCT CACGCAGGTG
ACGGACGCGG GCGGCGGTGT ATGGAAGTAC GGCTGGGACA CGAAGAGCCG TCTGGTTAGC
GTGACCGATC CGGAAGGCAA CCAACAGGTC GTCAACACCT ACGACGACAG TGACCGCGTG
ACCGCCCAGA AGCTCGCTGA CGGCAGCACG TTTGGTTTCG CCTACACGGT GACGGGCAGC
AAGATCACGC AGACCGACGT GACGGACAGG CGCGGCAGCA TTCGGCGGGT GGTGTTCGAC
GCAAACGGGC GGGTGGTGAG TAACACATAC CCGGCAGGTC AATCGATCGC GCAGGTACAG
ACCTTCACGC GCGATCCAAC GGGGCGCGTG ACGAACCTCA CTGCGGCCGA TCGCCGGTAC
ACATACACTT ACGACGCGAA CGGCAACCGT ATCAGCGAGG CGGATCAATA CGGTGTGTTG
GCGACCCGTA CTTTCGATAG CTATAGCCAA GTGCTGACGG AAGCGCAGGC CGGCGACCCT
CAGCGCGGCG TCAGCACTGT CTACACTTAT GACGCCAAGG GCAATCGGCT AACGCTGACC
GACCGGCTGG GCAACCGCAC CACGCAGACG AACGACAGCC AGGGCCGCCC GCTCACGGTA
ACCGACGCGC TAAAGGGGGT GACGAAGTAC ACCTGGAGCG GTGCGGACCT CACGGCAATC
ACCGATGCCC TGAGCCGCAC CACACAGTTC ACCGCGGACG CGGCGGGCCG GGTGACTGCG
GTGCAGGACC CGCTGGGCAA TAAAACGACG CGCACGCTCG ACGCGCTGGA TCGCACGACC
ACCGTGATCG ATGCGCTGGG CGGTGTGACG CGCTTCACGT GGGACCACAA CGGCCATCTG
CTGGGCCAGG CCGATCCGAA GGGTGTGACC ACGGCTTATA CGTACAACGC GATTGGCCGT
GCGGTGAGTA AGTCCGATCC GCTGGGGCAC GCTGAGACGT ACACGTGGAA TAACGCGGGG
CAACTGGCGT CGGTGACCGA TCGAAAGGGG CAACTGACAA CGTATTGGTA TGACGTGGCC
GGTGAGCTGC AGTCGGTCTA TTTCAACCCC GACGGCAACC CGCTGGGCGC ACCCGTACGC
TCTCTCGGCT ATGGATGGGA CGAGTACGGA AGGCTGCAGG GGACATCGGA CGGCGGCGTG
GGCCGTACAC CGGTCGGCTC GCGTTACTAT TTCGACAGCG TCACGGGCAA GGTAAGCCAG
TGGGTCGAAA CGCCTGGTAC GCAGCAGGGA TTCATCACCT ACGGTTACGA CCCGGACAGC
CGGGATCTAT CGTTCATCGG GGCGAAAGAC GGAACAATCA GCTACAGCCA TGACGCCGAA
CACCGCGTCA CGCAGGTCCA GTACGCGGTG GACGGTGAGC CGTTGCGCGT GTTCGGCTAC
AAATACGACG CGCTGGGCCG GGGCAGTCAG GCGACGCTGG CCAACGGCAT CACGGCAACC
TACACATGGG ATGCGGCGAG CCAACTGACC GGCATCACGT ACAAACGCGC TGACGGCAGC
GTGCTCGGTG ACCTGACGTA CGGCTACGAC CTCGCAGGAC GTCGCACGAG TGCGGGCGGC
AGTTTCGCGA AGGCAGACCT GCCGGCGGCT GTAAGCGATG CGCAGTACAA CGCGGCGAAC
CAACTCACGC ACTGGTCGGG CAACACGCTG GCGTATGACC TGAACGGTAA CCTGGCGAGC
GACGGTTCAA ACCGGTACAT GTGGAACGAG CAGAACCTGC TGGGCCAGAT CAGTGGTTCG
GTTAGCGCGA GCTTCAGCTA CGACATCTGG GGGCGTCGCC GGGACCAGAC GGTCAACGGC
CACAGTCAGC AGTCGTTCTG GAATGGTGAT GAGCTGAGAT TCACGATCGT CGATGGCGAC
TATGCGCATC GAAACCGGAT GTTCTCGGCA TACCCGGAAA GCCGGCTGGA TGAACTGACG
TATCGGCGCA TTGGCGACGA TGCGGGCCAG GACAGCTACA TCCTGCGCGA TGCGAACAAC
AACGTCATTG CGCTGACCGA TGCGAACCAG CAGAGCCAGA CGCAGTACAC CTACCAACCG
TATGGGACAA CCACGCAGAC GGGTGCGGTC GACCCGAACC TGCAACAGTA CACCGGGCGC
GAGAATGATG GGACGGGGTT GTATTACTAT CGGAGCCGGT ATTACAGTCC GGCGATAGGG
CGGTTCATTA GTGAAGACCC AATCGGCTAC GCGAGTGGGC AGACGAATGG GTATGCTTAT
GTGGGCGGGA ATCCGGTGCA GTTCACGGAT CCTGCCGGCG AAGTTGGCCT GCCAATGAAT
GGACCGGCCA ATACATGGGT ATTGAACCCT TCGGGCAGCG GGCAGACACG ACTTTATGAT
CCCAATGGCC GTCCCGCTGT TGATCTCGAT TTCGATCATT CTCATGGTGG AATGAGGCCA
CACGCGCACA ATTGGGATGG TAACAACCGG GATTGGGCCG TTGCCCCGTT CTGTCCGCTA
TGA
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| Protein sequence | MQVTDGIAAR RALLRPFILS FFMLLSWFVV PHAHAECFDD YVSNGAYPTD PNCGFLAASA
NFKSGFACGE PFTIASYCGG ASGGTTVEPI SPDDTVTLDG DGTGGQPGGS DGSGGCSGGD
ATAGCGSSTS GGDPVRLYTG QFHLVAHDLH VADTIALDLA RVYRSSAYDT SGRPMAGAFG
IGATFNYDSY LTVSAADSNN LRQLIQLYLP SGIHVPFTLR AGTSATWDDL TSAGEFYRGS
ITGNGTTKLL TLRDGHTMQF TMFAGLYRLT RVQDRNGNTV AINRNSSTGA ITGINCPNGR
ALTFASIVGA RGTPLVSRIS DPLNRQVNYQ YDGQDRLTQV TDAGGGVWKY GWDTKSRLVS
VTDPEGNQQV VNTYDDSDRV TAQKLADGST FGFAYTVTGS KITQTDVTDR RGSIRRVVFD
ANGRVVSNTY PAGQSIAQVQ TFTRDPTGRV TNLTAADRRY TYTYDANGNR ISEADQYGVL
ATRTFDSYSQ VLTEAQAGDP QRGVSTVYTY DAKGNRLTLT DRLGNRTTQT NDSQGRPLTV
TDALKGVTKY TWSGADLTAI TDALSRTTQF TADAAGRVTA VQDPLGNKTT RTLDALDRTT
TVIDALGGVT RFTWDHNGHL LGQADPKGVT TAYTYNAIGR AVSKSDPLGH AETYTWNNAG
QLASVTDRKG QLTTYWYDVA GELQSVYFNP DGNPLGAPVR SLGYGWDEYG RLQGTSDGGV
GRTPVGSRYY FDSVTGKVSQ WVETPGTQQG FITYGYDPDS RDLSFIGAKD GTISYSHDAE
HRVTQVQYAV DGEPLRVFGY KYDALGRGSQ ATLANGITAT YTWDAASQLT GITYKRADGS
VLGDLTYGYD LAGRRTSAGG SFAKADLPAA VSDAQYNAAN QLTHWSGNTL AYDLNGNLAS
DGSNRYMWNE QNLLGQISGS VSASFSYDIW GRRRDQTVNG HSQQSFWNGD ELRFTIVDGD
YAHRNRMFSA YPESRLDELT YRRIGDDAGQ DSYILRDANN NVIALTDANQ QSQTQYTYQP
YGTTTQTGAV DPNLQQYTGR ENDGTGLYYY RSRYYSPAIG RFISEDPIGY ASGQTNGYAY
VGGNPVQFTD PAGEVGLPMN GPANTWVLNP SGSGQTRLYD PNGRPAVDLD FDHSHGGMRP
HAHNWDGNNR DWAVAPFCPL
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