| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7064 |
|---|
| Symbol | |
|---|
| ID | 6280301 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 3443595 |
|---|
| End bp | 3444392 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642618087 |
|---|
| Product | short chain dehydrogenase |
|---|
| Protein accession | YP_001890723 |
|---|
| Protein GI | 187921691 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.282667 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCAAA TCGACTTGAC CGGACAGGTA GCGGTGGTGA CGGGCGGTTC GTCCGGTATC
GGCCTCGCGA CTGCCGAACT GTTTCTGCGG GCGGGCGCCT CGGTCGCGAT CTGCGGCCGC
GACACCGAAC GTCTCGCGCA AGCGGAAACC ACGCTGAAAG GGCAGTTCCC GCAAGCGCAA
CTGCTCGCGC ATCGCTGCAA CGTGCTCGAC GCCGACGAAG TGAAAGCGTT TGCGGAAGCG
GTGCAGACGC GTTTCGGCCG CACCGACATG CTGGTGAATA ACGCAGGCCA AGGCCGCGTG
TCGACCTTCG CCGACACCAC CGACGAAGCC TGGCGCGAAG AACTCGATCT GAAGTACTTC
AGCGTGATTC GCCCGACCCG CGCGTTTCTG CCGATGCTTC GAGACGCCGC GAACCCCGCT
GTGGTTTGCG TCAACTCGCT GCTGGCCCTG CAACCCGAGC CGCACATGGT CGCGACTTCA
GCGGCGCGCG CCGGCGTGCA GAACCTGCTC AAGTCGCTCG CGGTGGAACT CGCGCCGCAG
CGCATCCGCG TCAATTCGAT TCTGATCGGC ATCGTCGAAT CGGGTCAATG GCGCCGCCGT
TATGCGAAAG AAGCACGGCC GGGCCAGAGC TGGGAAGACT GGACGGCGGA ACTGGCGCGC
AAGAAAAACA TTCCGCTAGG CCGCTTCGGT CGCCCCGAAG AAGCCGCTCA AGCACTCTTT
TATCTGGCTA CGACGCTGTC GTCCTATACG ACGGGCAGTC ATATCGATGT TTCTGGAGGC
GTTGCACGAC ATGTCTAA
|
|---|
| Protein sequence | MIQIDLTGQV AVVTGGSSGI GLATAELFLR AGASVAICGR DTERLAQAET TLKGQFPQAQ
LLAHRCNVLD ADEVKAFAEA VQTRFGRTDM LVNNAGQGRV STFADTTDEA WREELDLKYF
SVIRPTRAFL PMLRDAANPA VVCVNSLLAL QPEPHMVATS AARAGVQNLL KSLAVELAPQ
RIRVNSILIG IVESGQWRRR YAKEARPGQS WEDWTAELAR KKNIPLGRFG RPEEAAQALF
YLATTLSSYT TGSHIDVSGG VARHV
|
|---|
| |