| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7040 |
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| Symbol | |
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| ID | 6280288 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3422448 |
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| End bp | 3423458 |
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| Gene Length | 1011 bp |
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| Protein Length | 336 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642618063 |
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| Product | hopanoid-associated sugar epimerase |
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| Protein accession | YP_001890699 |
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| Protein GI | 187921667 |
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| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
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| TIGRFAM ID | [TIGR03466] hopanoid-associated sugar epimerase |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0000519767 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGACCGAAC AAAATCGCGA TCTCGTACTC GTGACCGGCG CCTCCGGCTT TGTCGGCTCG
TCGGTGGCGC GCATCGCGCA ACAGAAGGGT TTCAGGGTGC GCGTGCTGGT GCGCGCCACG
AGCCCGCGTC AGAACGTCGA GTCGCTGGAC GCGGAAATCG TGGTCGGCGA TATGCGCGAC
GAAGCGTCGA TGCGCAACGC ACTGCGCGGC GTGCGCTATC TGCTGCACGT GGCCGCCGAC
TATCGGCTGT GGGCGCCTGA CCCGAGCGAG ATCGAGCGCT CGAACCTCGA AGGCACCGAG
GCGACCATGC GCGCGGCGCT GAAGGAAGGC GTCGAGCGCA TGGTCTACAC GAGCAGTGTC
GCCACGTTGA AAGTGACCAG TTCCGGCCAG TCCGCCGACG AAACCTCGCC GCTCAAAGCC
GATCAGGCGA TCGGCGTGTA CAAGCGCAGC AAGGTGCTGG CCGAGCGCGC GGTGGAGCGG
ATGATCGCCG AAGACGGCCT GCCGGCGGTG ATCGTCAATC CGTCCACGCC AATCGGACCG
CGCGATGTCA AGCCGACGCC GACGGGACGC ATTATCGTGG AAGCGGCGCT CGGCAAGATT
CCGGCGTTCG TCGACACGGG CCTGAATCTC GTGCACGTGG ATGACGTCGC GACCGGCCAT
TTCCTCGCGC TCGAACGCGG CAAGATCGGC GAGCGTTATA TTCTCGGCGG CGAAAATCTG
CCGCTTCAAC AGATGCTCGC CGATATCGCG GCGCTGACCG GCCGCAAGGC GCCGACGCTG
AGCCTGCCGC GCTGGCCGCT GTATCCGCTG GCCATGGGCG CCGAAGCCGT CGCCAAGATC
ACGAAACGCG AACCGTTCGT CACCGTCGAC GGCTTGAAAA TGTCGAAGAA CAAGATGTAT
TTCTCTTCGG CAAAAGCGGA ACGCGAGCTC GGTTATCGCT CGCGGCCCTA TCGCGAGGGC
TTGAGCGACG CACTCGACTG GTTCAGACAA GCTGGCTATC TGAAGCCGTG A
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| Protein sequence | MTEQNRDLVL VTGASGFVGS SVARIAQQKG FRVRVLVRAT SPRQNVESLD AEIVVGDMRD
EASMRNALRG VRYLLHVAAD YRLWAPDPSE IERSNLEGTE ATMRAALKEG VERMVYTSSV
ATLKVTSSGQ SADETSPLKA DQAIGVYKRS KVLAERAVER MIAEDGLPAV IVNPSTPIGP
RDVKPTPTGR IIVEAALGKI PAFVDTGLNL VHVDDVATGH FLALERGKIG ERYILGGENL
PLQQMLADIA ALTGRKAPTL SLPRWPLYPL AMGAEAVAKI TKREPFVTVD GLKMSKNKMY
FSSAKAEREL GYRSRPYREG LSDALDWFRQ AGYLKP
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