| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7037 |
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| Symbol | |
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| ID | 6278098 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3419649 |
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| End bp | 3420515 |
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| Gene Length | 867 bp |
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| Protein Length | 288 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642618060 |
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| Product | squalene synthase HpnC |
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| Protein accession | YP_001890696 |
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| Protein GI | 187921664 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.0000587069 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGACGTCG ATCAATACGA AAACTTTCCG GTCGCGAGCG TGTTGCTGCC CAAGGCGCTG
CGCGCGCCCA TCGGCATTAT CTATCAGGTT GTCCGCACCG CGGGTGACAT TGCCGACGAA
GGCGACTGGA GCGCAACCGA GCGGCACGCC CGTCTAGCCG ACTTCCGCGC CGGGCTCGAC
GCAGTGGCGG AGCGGCGCGC GGCGCCAGTG CATCCGCTTC TGTTCGGCAA GCTTGCCGGT
GTGGTTGCCC AGTATAAACT GCCGCTCGCG CCGTTCTACG ATCTGCTTCA CGCGTGCGGC
CAGGACATCG ACACCAATCG CTATGCCGAC CGCGCCGCGC TGCTCGACTA TTGCCGCCAC
TCGGCCAATC CGCTTGGGCA TCTGATGCTG CACCTGATCG GCGCGGCCAC GCCGGATAAT
CTTGCCGACG CCGACGCGAT CTGCACGGCG TCGCAGTTGA TCAGCTTCTG GCTCGACGTC
TCCGCCGACT GGAAAAAGGA CCGCGTGTAT TTGCCGCTGA CCGATATGCG GCGCTTCAAC
GTGACCGAGG CGCACATCGC CAACGGCGTC GCCGATGACG ACTGGCGGGC GCTCATGGCG
CACGAAGTGT CGTTCGTGCG TGAGATGCTG GTGCGCGGCG CGCCGCTCGC GCTGCGAATT
CCGGGGCGGC TGGGCATCGA GTTATGCGGC GCCATTCACG GCGGCCTGCG GTTTCTCGAA
CGCATCGAGA AAGTGGGCTA CGACGTGTTT CACGAGCGGC CGGTGCTCAA TACGTTTGAC
TGGTGCGTGG TCGCGGCCCG CACGGTGGTG ATGTGGCTGT CGCGTCGTGT CGGCGTAGAA
GCGCGCTCAA TCGAGGGTAA TGCTTAA
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| Protein sequence | MDVDQYENFP VASVLLPKAL RAPIGIIYQV VRTAGDIADE GDWSATERHA RLADFRAGLD
AVAERRAAPV HPLLFGKLAG VVAQYKLPLA PFYDLLHACG QDIDTNRYAD RAALLDYCRH
SANPLGHLML HLIGAATPDN LADADAICTA SQLISFWLDV SADWKKDRVY LPLTDMRRFN
VTEAHIANGV ADDDWRALMA HEVSFVREML VRGAPLALRI PGRLGIELCG AIHGGLRFLE
RIEKVGYDVF HERPVLNTFD WCVVAARTVV MWLSRRVGVE ARSIEGNA
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