| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7029 |
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| Symbol | |
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| ID | 6280355 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3409083 |
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| End bp | 3411113 |
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| Gene Length | 2031 bp |
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| Protein Length | 676 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642618052 |
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| Product | squalene-hopene cyclase |
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| Protein accession | YP_001890688 |
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| Protein GI | 187921656 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1657] Squalene cyclase |
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| TIGRFAM ID | [TIGR01507] squalene-hopene cyclase
[TIGR01787] squalene/oxidosqualene cyclases |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.00000008735 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGAACGATT TATCTCAAGC CCAGCCACTG GACGCCATCC TGCCCGATTT CGCCGACGCA
GCGCCGAGCG CGCCCGCGCC GGCCGTTACG GGCGAGGCGC CCACGGCATC GCTCGACGCC
GCGATCACGC GCGCGACCGA GGCGATTCTC GCCGCGCAGA AGCCCGACGG CCACTGGGTC
TACGAACTCG AAGCCGACGC GACGATTCCC GCCGAATACG TGCTGCTGGT TCACTATCTC
GGCGAAACGC CGAACCTCGA ACTGGAACAG AAGATCGCGC GCTATCTGCG GCGCATTCAG
TTGCCCGACG GCGGCTGGCC GCTGTTCACC GACGGCGCGC TCGACATCAG CGCCAGCGTG
AAAGCGTATT TCGCGCTGAA GATGATCGGC GACCCGGCCG ACGCCGAGCA CATGGTTCGC
GCGCGCGAGG CGATTCTCGC CCACGGCGGC GCCGAAACCG TGAACGTCTT CACGCGGATT
CTGCTCGCGC TGTTCGGCGT GGTGTCGTGG CGCGCGGTGC CGATGATGCC CGTCGAGATC
ATGCTGTTGC CCATGTGGTT TCCGTTTCAT CTGTCGAAGG TGTCGTACTG GGCGCGTACC
GTGATCGTGC CGCTGCTCGT GCTCAATGCA AAGCGGCCGG TGGCGCGCAA CCCGCGCCGC
GTGCGCATCG ACGAACTGTT CCGCGGCGCG CCGGTCAACA CCGGCCCGCG CGACCGGGCG
CCGCATCAGC ACGCCGGCTG GTTCCGGTTT TTCAGCGGCG TGGACGTGTT GCTGCGCGCC
GTGGATGGTC TGTTCCCGAA GTCCACGCGC GAGCGCGCGG TGCGGCAGGC GGTGGCTTTC
GTCGATGAAC GGCTGAATGG CGAAGACGGC CTGGGCGCGA TTTTCCCCGC GATGGCGAAC
TCGGTGATGA TGTACGACGT GCTCGGTTAT CCGGCCGATC ATCCGAATCG CGCGATTGCT
CGCCAGTCGA TCGACAAGCT CCTCGTCATC AAGGATGACG AAGCATATTG CCAGCCGTGT
CTGTCGCCGG TGTGGGATAC GTCGCTCGCG GCTCATGCGT TGCTCGAAAC CGGCGAGGCG
CATGCCGAAC AGGCCGCCGA ACGCGGGCTC GCGTGGCTGC GTCCGCTGCA GATTCTCGAC
GTGCGCGGCG ACTGGATTTC GCGCCGTCCG AATGTGCGGC CGGGCGGCTG GGCGTTCCAG
TACAACAACG CGCATTATCC GGACGTCGAC GATACGGCGG TGGTCGCCAT GGCGATGCAG
CGCTCGGCAA CGGTGACGCA ATCCGATGTA GATCGCGACG CCATTGCGCG TGCGCGTGAA
TGGGTGGTCG GCATGCAGAG CAGCGACGGC GGCTGGGGCG CGTTCGAGCC GGAAAACACG
CAGTACTACC TGAACAACAT TCCGTTCTCC GATCACGGCG CCCTGCTCGA TCCGCCGACC
GCGGACGTCT CGGGCCGCTG CCTGTCGATG CTCGCGCAAC TCGGCGAACT GCCGCAGAAC
AGCGAGCCGG CGCAACGTGC GTTCGACTAC ATGCTGAAGG AGCAGGAATC GGATGGCAGC
TGGTACGGCC GCTGGGGCTT GAACTACATC TATGGCACGT GGACCGCGCT GTGTTCGCTG
AACGCTGCCG GCCTGCCACA CGACGACCCG CGCATGAAGC GCGCAGCGCA GTGGCTCCTG
TCGATCCAGA ACGAAGACGG CGGCTGGGGC GAGGGCGGCG AGAGCTACAA GCTCGACTAC
CACGGCTACG AGCGTGCGCC GAGCACGGCT TCGCAAACCG CGTGGGCTCT CATGGGCCTG
ATGGCGGCCG GTGAGGTCAA TCACGAAGCG GTGGCGCGCG GCGTCGCGTA CCTGGAGCGT
GAACAGCGTG AGCACGGTCT CTGGGACGAA ACACGTTTCA CCGCGACCGG TTTCCCGCGT
GTGTTCTATC TGCGTTATCA CGGCTATCGC AAGTTCTTCC CGCTGTGGGC GCTGGCGCGC
TTCCGTCATC TGAAGCGCAA CGGCCTCACG CGCGTCGCGG TCGGGATGTA A
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| Protein sequence | MNDLSQAQPL DAILPDFADA APSAPAPAVT GEAPTASLDA AITRATEAIL AAQKPDGHWV
YELEADATIP AEYVLLVHYL GETPNLELEQ KIARYLRRIQ LPDGGWPLFT DGALDISASV
KAYFALKMIG DPADAEHMVR AREAILAHGG AETVNVFTRI LLALFGVVSW RAVPMMPVEI
MLLPMWFPFH LSKVSYWART VIVPLLVLNA KRPVARNPRR VRIDELFRGA PVNTGPRDRA
PHQHAGWFRF FSGVDVLLRA VDGLFPKSTR ERAVRQAVAF VDERLNGEDG LGAIFPAMAN
SVMMYDVLGY PADHPNRAIA RQSIDKLLVI KDDEAYCQPC LSPVWDTSLA AHALLETGEA
HAEQAAERGL AWLRPLQILD VRGDWISRRP NVRPGGWAFQ YNNAHYPDVD DTAVVAMAMQ
RSATVTQSDV DRDAIARARE WVVGMQSSDG GWGAFEPENT QYYLNNIPFS DHGALLDPPT
ADVSGRCLSM LAQLGELPQN SEPAQRAFDY MLKEQESDGS WYGRWGLNYI YGTWTALCSL
NAAGLPHDDP RMKRAAQWLL SIQNEDGGWG EGGESYKLDY HGYERAPSTA SQTAWALMGL
MAAGEVNHEA VARGVAYLER EQREHGLWDE TRFTATGFPR VFYLRYHGYR KFFPLWALAR
FRHLKRNGLT RVAVGM
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