| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7028 |
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| Symbol | |
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| ID | 6279995 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3407818 |
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| End bp | 3409086 |
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| Gene Length | 1269 bp |
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| Protein Length | 422 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 642618051 |
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| Product | squalene-associated FAD-dependent desaturase |
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| Protein accession | YP_001890687 |
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| Protein GI | 187921655 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG1232] Protoporphyrinogen oxidase |
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| TIGRFAM ID | [TIGR03467] squalene-associated FAD-dependent desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.00000526905 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGCAAAAGC TCGTACATGT GGTCGGCGCA GGCCTTGCCG GCCTGGCCGC CGCAGTGCAA
CTGCAGCGGC GCGGCGCGCA CGTCGTGCTG CATGAAGCGG CGGCCCAGGC GGGCGGCCGT
TGCCGCTCGT ACTACGATCC CAAGCTGGGC GCGACGCTCG ACACCGGCAA TCACATGTTG
GTGTCGGGCA ATACTGCGAC GCTCAACTAC GTGCGGGCGA TCGGCGCCGC CGACGAACTG
GTCGGCCCGG CGCAGCCGGA ATATCCGTTC GTGGATCTGG CGACGCGGGC TCGCTGGACC
GTGCGTATGT CGCCGGGACA TTTGCCGTGG TGGGTCTTCG ATCCGAACGC GCGCGTGCCG
AATACCGGCC CGGCCGATTA TCTGGCGCTC GCGCCGCTTC TGCTCGCCCG ACCGGGACGC
AGCGTCGCGC AGACCATGCG TTGCAACGGT CCGTTGTGGG ACCGTCTGCT GCGGCCGCTG
TTTCACGCGA TGCTGAACGT CGAGCCGCGC GATGCGTCGG CAGAACTGAC GGGCGCCATG
GTGCGCGAAG CGCTGCTTGC CGGCGGCCTC GCGTGCCGGC CGCTGGTCGC GCGTAACGGC
CTTGGCAGCG CGTTTGTCGA TCCGGCCTTG CGCCTGCTGC AACATGGCGG CGCGGCGATC
AGGCTGGGTT CGCGCCTGGA CGGAATCGTT TTTGCCGCCG ACAACCGCCG TGTGCAAGCG
CTGCATTTCG CCGGCGAGAG CGTCACGCTC GACGCGAACC ATGCCGTGAT TCTCGCGGTG
CCGCCGGACA TCGCGCAGAC GCTCGTGCAA GGTTTGCGCG CGCCGACGCG CTTCGCGGCC
ACCGTCAACG TGCATTTCGC GGTCGAGCCG CCGTTTGGCT TGCCGCAGGT CACCGGGCTG
CTCAACGGCA CGGCCGAGTG GCTGTTCGCC TTTGAGGGCC GCTTGTCGGT GACCGTCAAC
GGCGCTGAGC GCTTGCTCGA CACGCCGCAC GAAGCCCTCG CGGCCTCCGT CTGGGCCGAA
GTGGCGCAGG CGGCCAGCTT GCCGGCCGCG CCGATGCCGG CCTGGCAAGT CGTCGTGGAA
AAGCGTGCGA CCTTTGCCGC GCTGCCGGAT CAGGAAACGC GGCGGCCCGG TACGCGCACT
CGCTGGAATA ACCTCATGCT CGCGGGCGAC TGGACGGCTA CCGGCCTGCC CGCGACGATA
GAAGGCGCGA TCCGCTCCGG CCAGAAGGCC GCGGATACGT TGCTGAATGA ACCGATGGAA
CGCCGATGA
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| Protein sequence | MQKLVHVVGA GLAGLAAAVQ LQRRGAHVVL HEAAAQAGGR CRSYYDPKLG ATLDTGNHML
VSGNTATLNY VRAIGAADEL VGPAQPEYPF VDLATRARWT VRMSPGHLPW WVFDPNARVP
NTGPADYLAL APLLLARPGR SVAQTMRCNG PLWDRLLRPL FHAMLNVEPR DASAELTGAM
VREALLAGGL ACRPLVARNG LGSAFVDPAL RLLQHGGAAI RLGSRLDGIV FAADNRRVQA
LHFAGESVTL DANHAVILAV PPDIAQTLVQ GLRAPTRFAA TVNVHFAVEP PFGLPQVTGL
LNGTAEWLFA FEGRLSVTVN GAERLLDTPH EALAASVWAE VAQAASLPAA PMPAWQVVVE
KRATFAALPD QETRRPGTRT RWNNLMLAGD WTATGLPATI EGAIRSGQKA ADTLLNEPME
RR
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