| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_7027 |
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| Symbol | |
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| ID | 6279994 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3406965 |
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| End bp | 3407813 |
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| Gene Length | 849 bp |
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| Protein Length | 282 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642618050 |
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| Product | squalene synthase HpnD |
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| Protein accession | YP_001890686 |
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| Protein GI | 187921654 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.597423 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.000000555779 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | TTGGCTGTTT CCAATCTTGT CGTGGACGAT ACAGAAATCG ACGCCGCTGC CGCCACGTCC
GGCAGCTCGT TCTATCTCGC CATGCGCATC CTGCCGGCCG CGCAGCGCGA TGCGATGTAT
CAGGTCTACG CCTTCTGCCG CGCCGTCGAC GACATCGCCG ACAGCGACCT GCCGCGCGCC
GAACGCGCCG CCGCGCTCGA GCGCTGGCGT GCCGATATCG ACGCGTGCTA CGCCGGCGCG
CCGCGCGCTT CGCTGCGTGC GCTGACGCGG CACATTCACA CCTTTCACCT GCAACGCGAA
GATTTTCACG CGATGATCGA CGGCATGGCG ATGGACGCCG CCGAAGACAT CTGCGCACCC
GACGAAGCCA CGCTCGACCT CTATTGCGAT CGCGTCGCCA GCGCGGCGGG CCGTCTTTCG
GTGAGGATAT TCGGGATGCA GGAAGAGCCT GGCCGTTTGC TCGCGCATCA TCTGGGCCGC
GCGCTGCAGC TCACCAACAT CCTGCGCGAT ATCGACGAAG ACGCCGGCAT CAACCGCTGT
TATCTGCCGC ACGAATTGCT GGCGCGCGAA GGCATCGCGG TGAGGAATCC CACGCAGATC
GCCGACGACC CGTCGCTGCC GCGCGTGTGC GCCACGCTCG CCGAGCGGGC GAAGGAGCAC
TTCGCCGCCT CCGACGCGAT CATGGACCGC GAGCCGCGCA ACCATGTGCG TGCGCCGCGC
ATCATGTCGG GCGTGTATCG CTTGCTGCTC GAACGGACGC TGGAGCGCGG CTTCGACATT
CCGCGCACGA AGGTCAGCAA GCCGAAGCTC CGCATGCTGT GGATCGTGGC GCGTTACGCG
CTCTTCTGA
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| Protein sequence | MAVSNLVVDD TEIDAAAATS GSSFYLAMRI LPAAQRDAMY QVYAFCRAVD DIADSDLPRA
ERAAALERWR ADIDACYAGA PRASLRALTR HIHTFHLQRE DFHAMIDGMA MDAAEDICAP
DEATLDLYCD RVASAAGRLS VRIFGMQEEP GRLLAHHLGR ALQLTNILRD IDEDAGINRC
YLPHELLARE GIAVRNPTQI ADDPSLPRVC ATLAERAKEH FAASDAIMDR EPRNHVRAPR
IMSGVYRLLL ERTLERGFDI PRTKVSKPKL RMLWIVARYA LF
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