Gene Bphyt_6992 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_6992 
Symbol 
ID6279955 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp3372200 
End bp3373447 
Gene Length1248 bp 
Protein Length415 aa 
Translation table11 
GC content66% 
IMG OID642618015 
Productefflux transporter, RND family, MFP subunit 
Protein accessionYP_001890651 
Protein GI187921619 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0845] Membrane-fusion protein 
TIGRFAM ID[TIGR01730] RND family efflux transporter, MFP subunit 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones54 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCCACTC TCTCCATCGC GGTCGAACGG TCGCGGCGTG CGCCCGCGTT CACGCTTCTT 
GCCGCAGCCG TCGCCGCTGC CGCGTTCATG TTATCGGGTT GCGGCGAACA GGCGTCTCAC
GGGCCGATGC AATCGGTTCC CGAAGTCGGC GTAGAAACGA TCACGCCGCA TACCGTCGTG
TCGAGCACTG AATTGTCCGG GCGGCTCTCG GCGATCCGCG TCGCGGAAGT CAGGCCGCAG
GTTGAAGGCA TCGTCAGAAA GCGCCTCTTC ACCGAAGGCT CGCAAGTCGC GGCCGGCGCC
GTGCTGTATC AGATCGACGC GTCCAGTTAT CAAGCCGCCT ACGACCAGGC GGTCGGCACG
CTGGCCAAAG CCGTGGCGAC GGCCAGCGCC GCGCAGACCA AGGCCGCGCG CTACGCCGAG
CTCTCGAAGA TCCAGGGCGT CAGCCGCCAG GACTACGACG ACGCCGTCGC CGCATGGGAC
GAAGCAAAAG CCGACGTGGT CGCCGATCGC GCCGCATTGA AGACCGCGGC GATCAACCTC
GGTTACACGA AGGTGGTGGC GCCGATCGCG GGCCGCATCG GCAAATCGAG CGTGACCGAA
GGCGCGCTCG TGACCGCCGA ACAGACCACC GCGCTCGCAA CCGTGCAAGC AACCACGGAA
ATGTATCTCG ACGTCACGCG CTCTTCGGCG GATTGGCTGC GCTTGCAGAA GGAATTCGCG
AGCGGGCAAT TGCAGCAGTC TGGCACCGAC GGCGCCGTCG TTCATCTGGT GATGGAAGAC
GGCAGCACGT ATGCGCAACC CGGCAAGCTG CTGTTCTCCG ATATCACCGT CGATGCCACC
ACCGGTTCGG TGACCTTGCG CTGCGTGTTT CCCAATCCGG ACGGCGTGTT GTTGCCCGGC
ATGTTCGTGC GCGCGCGACT CGAAGAAGGC GTGAACCAGC AAGCGATCAC GGTGCCGCAA
CTCGCGGTCT CGCGGGCGTC GGACGGCTCG GCCAGCGTGC TCACTGTCGG CGCCGACAAC
AAGGTCGCGA AAACCGCCGT GACCGCCGAC ACCGCATCAG GCAGCGACTG GCTCGTCACG
AGCGGCCTCA AGGCGGGCGA TCGCGTGATC GTCGCGGGCT CGCAGAATGC GCGCGCCGGT
GCGGTCGTCA AGCCGGTCGA AAGTCCCGCT GCGGCGGACG CATCGGGTGC ATCGAGCGCA
TCGGGCACGC CCGCCACCGC GGACAACACG TCGGCAGCAC ATAGTTAA
 
Protein sequence
MPTLSIAVER SRRAPAFTLL AAAVAAAAFM LSGCGEQASH GPMQSVPEVG VETITPHTVV 
SSTELSGRLS AIRVAEVRPQ VEGIVRKRLF TEGSQVAAGA VLYQIDASSY QAAYDQAVGT
LAKAVATASA AQTKAARYAE LSKIQGVSRQ DYDDAVAAWD EAKADVVADR AALKTAAINL
GYTKVVAPIA GRIGKSSVTE GALVTAEQTT ALATVQATTE MYLDVTRSSA DWLRLQKEFA
SGQLQQSGTD GAVVHLVMED GSTYAQPGKL LFSDITVDAT TGSVTLRCVF PNPDGVLLPG
MFVRARLEEG VNQQAITVPQ LAVSRASDGS ASVLTVGADN KVAKTAVTAD TASGSDWLVT
SGLKAGDRVI VAGSQNARAG AVVKPVESPA AADASGASSA SGTPATADNT SAAHS