| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6968 |
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| Symbol | |
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| ID | 6278900 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3344826 |
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| End bp | 3346271 |
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| Gene Length | 1446 bp |
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| Protein Length | 481 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 642617992 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001890628 |
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| Protein GI | 187921596 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.271604 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 56 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCGTC GAGAGACCAT TGCGCGTGTC AAGGCAAGTC TGCCCGAACT GGCCGCTAGC
ATTCCAATCG GTGACACGGC TTTTAATATG CGCTGCGGAT TGAGCAGTGA ACAGTCGAGT
CCCATTCGAA ACTTCGGTTA TACGTCGTTT CTCGATCCGC TCACCGGTTT GTATAACCGC
ACATATGTTG CCGAACGCCT TCAGCATTTG CTGAAATTGA ACCCTGCGGC GCGCGTCGCC
GTGCTTTTCA TCAATCTCGA TTGCTTCGGC AAAATCAACG ATGTCGCCGG TTACGAGCTT
GGTGATCGCG TTTTGCGCGG CATCGCACGC CGGCTTGCCG GACTGATGAA TCATGATGAC
CTACTCGGGC GGATCTGTGG CGACGAGTTT GTTGTCGTTG TCGATAAGCG CGGCGACGCG
TCGGCAATCG GCGAGTTCGC GCTGCAAATC CTCCACCTGT TCAGCACGCC GCTGGAAATC
GCGGGCCGTG AGTATCACCT GGGCGCATCG ATCGGCATTG CCTGCTCCTC CGGCGACGCT
CGCGGTGCGG ACACGCTGAT ACGCAACGCC GGCTCGGCGA TGCGTCGCGC GAAGGAGAGC
GGTCGCGGCC GGGTGCAATT TTTCACGGAG TGCTTGCAAG ACGAGTCGCA ACGTCGCTTC
AGGCTGGAGG AATTGTTGCG CCACGCGCTC GCCGCCGGTG AACTGAGGCT GGCTTATCAG
CCCATCATCA ACAGCGCCTC GCACCGGACG GTAGGCGCCG AAGCGCTACT GCGCTGGACC
AGCAGCGAGC TGGGCGAAGT CGCGCCAGCC GAGTTCATAC CGGTTGCGGA AGAGGCCGGT
CTGATGGCGA GCATCGGCGA CTGGGTGCTG GAACAGGCCT GCGCCCAAGC TGCTCAATGG
CGCAGAAGCA TTGCGCCGCG TCTGCCTGTC TCAGTCAACA TTTCGCCGCT CCAGTTCAAC
GAGGGCCTCG TGCGGCACGT TGCCGCGTGC CTCGAACGCA ATGGCCTCGA CGCATCGGCG
CTGCAACTGG AGATTACGGA GCGCGTATTG ATGCCGGATG ACCCGACGGT TGCGGCGACG
ACGGCAGCAT TGGCGAGTCT CGGCGTCACG CTCGCTCTCG ACGACTTTGG CACGGGCTAC
GCGTCGCTGT CGTACCTCAA GCGCTTTGCT TTGCACAACC TGAAGATCGA TCGCTCGTTC
GTCGCGGGTT TGCCACGCGA TAACGATTCG ATCGCGATCA CGCGTGCGCT CGTGGCGATG
GCACACGCGT GCGGCATGAC AGTCACGGCC GAAGGCGTGG AAACCCATGA ACAGGCAACG
GTTCTGCGTG AGATGGGATG CGACATGTTG CAGGGCTATC TGATTGGCTG CCCGGCGAGC
GCGGATAAAT TTTCCGCCTC GCTGCGGGGC GCCAGTCGCG CGAATACACA GCGCGCTACG
CCGTAA
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| Protein sequence | MTRRETIARV KASLPELAAS IPIGDTAFNM RCGLSSEQSS PIRNFGYTSF LDPLTGLYNR
TYVAERLQHL LKLNPAARVA VLFINLDCFG KINDVAGYEL GDRVLRGIAR RLAGLMNHDD
LLGRICGDEF VVVVDKRGDA SAIGEFALQI LHLFSTPLEI AGREYHLGAS IGIACSSGDA
RGADTLIRNA GSAMRRAKES GRGRVQFFTE CLQDESQRRF RLEELLRHAL AAGELRLAYQ
PIINSASHRT VGAEALLRWT SSELGEVAPA EFIPVAEEAG LMASIGDWVL EQACAQAAQW
RRSIAPRLPV SVNISPLQFN EGLVRHVAAC LERNGLDASA LQLEITERVL MPDDPTVAAT
TAALASLGVT LALDDFGTGY ASLSYLKRFA LHNLKIDRSF VAGLPRDNDS IAITRALVAM
AHACGMTVTA EGVETHEQAT VLREMGCDML QGYLIGCPAS ADKFSASLRG ASRANTQRAT
P
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