| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6927 |
|---|
| Symbol | |
|---|
| ID | 6279224 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3295676 |
|---|
| End bp | 3298336 |
|---|
| Gene Length | 2661 bp |
|---|
| Protein Length | 886 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642617954 |
|---|
| Product | fimbrial biogenesis outer membrane usher protein |
|---|
| Protein accession | YP_001890590 |
|---|
| Protein GI | 187921558 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3188] P pilus assembly protein, porin PapC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.425262 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGCT CGCTTCGTTA TTATCCGGCT GCTCGCACCG ATGAACGCTC TGGCGCGTTC
AGGCTCAGGC GTGTCGCCAT CATTGCGATG TTCGCATTCG CAGTGTTGGG CGGCGTTCAG
CCGACGAGCG CGCAAGCGGC AGAAGCGATG GAGGGCGACG TGCCGGTGGA ATTCGACTCG
ATGTTTCTGC GAGTCGACTC CGGCGCAGCC GTGGACGTGA CGCGTTTTGC TCGCGGCAAC
CCGGTCAAAC CGGGCGTTTA TTCGGTTGAC CTGCTGGTGA ATGGCATTCG CGTTGCACGT
CAGGATGTCC GCTTTGTGGA GACGAGCCCG CAGGCCGGCG CACGTCCTTG CCTGACACAC
CGATTGCTGG AAACGCTCGG CGTGGACTTC GCTAAGCTTG CCGCGAGCAA TGACGCAAAA
GTGGTCGCGA CCGGCACGGC CGAAGCCGAC CCCGACCCCG ACGAATGCAT CAGTCTTGCT
GCAAAGATCC CGGCGGCCAC CGTGGACTTC GACTTCACGG AGCAGAAGCT TTTGCTGAGC
GTGCCGCAGA AGTTCATGCG CAATACGGCG CGCGGCTATG TACCGCCCGA CATGTGGCAG
GACGGTGTGA ACGCGGCGTT CGTGAGCTAC AACGCGAACA CTTATTACAG CCGTGGATCA
GGCGTGCAAT CGACCCAGAA TTATTTGGGT TTGAATGCCG GCGTGAACCT CGGCAGTTGG
CACTTCCGGC ATCAGTCCTC GGTGACTCAG CAATCCGGCA CTGGCACGAA CTTCGACGAC
ATCGCGACTT ACCTTCAGCA TGACCTCGGC GCGCTGAAGT CGCAGGTGAT TGTCGGCGAC
GGCTTCACGA CCGGCGACGT GTTCGACAGC GTTCAGTTTC GCGGCGCGCA GATCGCCACC
GATGATCGCA TGTTGCCGGA ATCGCTGCGA GGCTACGCGC CAGTGGTGCG CGGCATAGCG
GAATCGAATG CGCGTGTGAC GGTGCGTCAG AATGGTCAGG TGATCTATGA GACCACCGTC
TCGCCGGGCG CGTTCGAAAT CAATGATCTG TATCCGACGG GTTATGGCGG CAACCTCGAT
GTCACCGTCA CGGAAGCCGA CGGCCGCAAG AAGAATTTTA CCGTTGCCTA TGCCTCGGTT
GCCCAATCGC TGCGGCCTGG CATCACGCGC TTTTCTGTTA CGGCCGGTCA ACTCCGCAGT
TCCACGCTTG AGACGAAGCC GAATTTCGCG CAGTTCACGT TGCAACGCGG ACTGACCAAT
CTGGTGACGC TCTACGGCGG CGGTGTGGCT TCCACCGGCT ACGTGGCCGC ACAAATGGGC
ACGGCGCTGA ATACGAAGTT CGGCGCTTTT TCGGCCGACG TAACAGGTGC CCAGACCCAG
GTTCCGAATC AGGGCACCTC ACGCGGCACC AGCTTGCGCG TGGGTTACAG CAAGTTCATC
GATCCGACCA ACACGAACAT CGCGATTGCG GCGTACCGAT ACTCGACGGC GGGCTACATG
GATTTGTCGG ATGCCGCGTC CGTGCGCGAC CTTGCGTTGC GCGGCGGCGA TCCGGCCTCC
GTCTATCGCG AGCGCAACCG CTTTCAGCTC ACCCTCAATC AGAGCTTCAA AAAATATGGC
ACGGTCTTTC TGAACGCATC CGCCCAGCAG TACTGGAATC GCAACGGCAG CGACGTGTTC
TATCAGGCGG GATACACCAA AGCGTTCAAA TCTGGCACCT ACAGTATCAC CGCGGGTCGC
ACACGGTCCT CGAACGGCGT GATGTCGGAC CAGATCATGC TGGGTGCGAC GCTGCCGCTC
GGCCGCGGCC AGCAAGCGCC GCTGATGGCG ACCAATCTGT CGAGCTCCGG CGGCAACGCG
AACATGCAGA CGAGCGTGAG CGGCGCGCTC GGCGAGCGCA GCCAGTACTC GTACAACGCC
TACGGAACCT ACAGCACCGG TCATGGCAGC AGCACCGGAA ACGCCGGCGT GAGCGGGGCG
TACCGCGCGC CTTATGCGCA ACTGACCGGC TCGGCAAGCG CGGGGACGGG CTCGAATCAG
GCGTCGGCGG GTGTGAGCGG GTCGATCGTC GCGCATCCGG GCGGCGTGAC CTTCTCGCAG
ACGGTGAGCG ACACGTTCGG CGTTATCGAA GCACCGGGCG CGGCAGGGGC GAGTGTGAGC
AGCGCGCCCG GCGTGAAGCT CGATCGCCGT GGCTATGCCG TTGTGCCCTA TCTGACGCCG
TACGGCATGA ATACGGTCGA TATCGATCCA AAGGGCACGT CGACCGATGT GGAGTTCGAA
TCGACTTCGG AACAGGCGGT GCCGCGGTTC GGATCGGTGG TGATGATCAG GTACAAAACG
GTGACCGGAC GCGCGGCGTT GATCCGCGCA CCTCTGCTTG GCGATAAGGC GTTGCCGTTT
GGCGCCGATG TAGTCGATGC AAATGGACTT GGCGTGGGCG TCGTCGCGCA GGATAGCCGG
ATTTTCGCAC GCAGGCTCGA AGACAGCGGC GCGCTTTTCG TCAAGTGGGG TGTGAGTGAC
GCGGAGCGAT GCAAGATCGA TTATGTGTTG CCGAAGAAAG CAGCGAAGGA CGCGTACTTG
TCCGTGGAAG CTCATTGCGT GCCGGCAAAT GAAACTGTCG ATATAGATTC AGGCGCACTC
GTTGGCGCAA ATGAGCACTA G
|
|---|
| Protein sequence | MKGSLRYYPA ARTDERSGAF RLRRVAIIAM FAFAVLGGVQ PTSAQAAEAM EGDVPVEFDS
MFLRVDSGAA VDVTRFARGN PVKPGVYSVD LLVNGIRVAR QDVRFVETSP QAGARPCLTH
RLLETLGVDF AKLAASNDAK VVATGTAEAD PDPDECISLA AKIPAATVDF DFTEQKLLLS
VPQKFMRNTA RGYVPPDMWQ DGVNAAFVSY NANTYYSRGS GVQSTQNYLG LNAGVNLGSW
HFRHQSSVTQ QSGTGTNFDD IATYLQHDLG ALKSQVIVGD GFTTGDVFDS VQFRGAQIAT
DDRMLPESLR GYAPVVRGIA ESNARVTVRQ NGQVIYETTV SPGAFEINDL YPTGYGGNLD
VTVTEADGRK KNFTVAYASV AQSLRPGITR FSVTAGQLRS STLETKPNFA QFTLQRGLTN
LVTLYGGGVA STGYVAAQMG TALNTKFGAF SADVTGAQTQ VPNQGTSRGT SLRVGYSKFI
DPTNTNIAIA AYRYSTAGYM DLSDAASVRD LALRGGDPAS VYRERNRFQL TLNQSFKKYG
TVFLNASAQQ YWNRNGSDVF YQAGYTKAFK SGTYSITAGR TRSSNGVMSD QIMLGATLPL
GRGQQAPLMA TNLSSSGGNA NMQTSVSGAL GERSQYSYNA YGTYSTGHGS STGNAGVSGA
YRAPYAQLTG SASAGTGSNQ ASAGVSGSIV AHPGGVTFSQ TVSDTFGVIE APGAAGASVS
SAPGVKLDRR GYAVVPYLTP YGMNTVDIDP KGTSTDVEFE STSEQAVPRF GSVVMIRYKT
VTGRAALIRA PLLGDKALPF GADVVDANGL GVGVVAQDSR IFARRLEDSG ALFVKWGVSD
AERCKIDYVL PKKAAKDAYL SVEAHCVPAN ETVDIDSGAL VGANEH
|
|---|
| |