| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6913 |
|---|
| Symbol | |
|---|
| ID | 6278884 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3278780 |
|---|
| End bp | 3279523 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642617940 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001890576 |
|---|
| Protein GI | 187921544 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.214979 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.444362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACACAAA GACTGGCCGG CAAGACGGCC CTGATCACGG CGGCAGGACA AGGCATCGGA
CTCGCCACCG CCGAACTCTT CGCACGCGAA GGCGCGCGCG TGATCGCCAC GGATATCCGC
ATCGACGGAC TCGCCGGCAA GCCGGTCGAG GCGCGCAAGC TCGACGTGCG CGACGACGCG
GCGATCAAGG CGCTAGCGGC CGAGATCGGC GCGGTCGACG TGCTGTTCAA CTGCGCGGGC
TTCGTGCACG CGGGCAATAT TCTCGAATGC AGCGAAGAAG ATTGGGACTT CGCTTTCGAC
CTGAACGTGA AGGCGATGTA CCGCATGATC CGCGCGTTCC TGCCCGCCAT GCTGGACAAA
GGCGGCGGCT CGATCATCAA TATGTCGTCG GCGGCGTCGA GCGTGAAGGG CGTGCCGAAC
CGCTTTGCGT ATAGCGCTTC CAAAGCCGCG GTGATCGGGC TGACCAAGTC CGTTGCTGCG
GACTTCATCA CGCGTGGTGT ACGCTGTAAT GCGATCTGCC CGGGCACGGT GGCTTCGCCG
TCGCTCGAAC AGCGGATCGT CGCGCAGGCT CAGGCGCAAG GCGCGACGCT GGACGCCGTG
CAGGCCGCCT TTGTCGCGCG TCAGCCGATG GGCCGCATCG GCAAGCCGGA AGAGATCGCC
GCGTTGGCGC TGTATCTCGG GTCCGACGAG TCATCGTTTA CCACGGGCCA TGCGCATGTG
ATCGACGGCG GCTGGTCGAA CTGA
|
|---|
| Protein sequence | MTQRLAGKTA LITAAGQGIG LATAELFARE GARVIATDIR IDGLAGKPVE ARKLDVRDDA
AIKALAAEIG AVDVLFNCAG FVHAGNILEC SEEDWDFAFD LNVKAMYRMI RAFLPAMLDK
GGGSIINMSS AASSVKGVPN RFAYSASKAA VIGLTKSVAA DFITRGVRCN AICPGTVASP
SLEQRIVAQA QAQGATLDAV QAAFVARQPM GRIGKPEEIA ALALYLGSDE SSFTTGHAHV
IDGGWSN
|
|---|
| |