| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6888 |
|---|
| Symbol | |
|---|
| ID | 6279097 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3248375 |
|---|
| End bp | 3249472 |
|---|
| Gene Length | 1098 bp |
|---|
| Protein Length | 365 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642617915 |
|---|
| Product | spermidine/putrescine ABC transporter ATPase subunit |
|---|
| Protein accession | YP_001890551 |
|---|
| Protein GI | 187921519 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.0550256 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 31 |
|---|
| Fosmid unclonability p-value | 0.122938 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCG AAGACGTGAT CGTCAGCTTT CGAGGTGTTC GCAAGACCTA CGACGGCGAA
ACGCTAGTCG TCAAACAGCT CGATCTGGAT ATCTATCAGG GCGAATTCCT GACGCTGCTC
GGGCCGTCCG GTTCGGGCAA GACCACCTGT CTGATGATGC TGGCGGGTTT TGAATTTCCC
ACCGGCGGCG AAATCTGGCT GGACGGCACG CTGCTCAATA CCGTGCCGCC GCACAAGCGC
AACATCGGCA TGGTGTTTCA GAACTACGCG CTGTTCCCGC ATCTGACGGT GGAGCAGAAC
GTCGCGTATC CGCTGACCGT GCGCAAGATT TCGGCGGAAG AGCGCGCGCA TCGCACGAAT
AACGCGCTCA AGATGGTGCG CATGGAGAGC TTCGCGAAGC GCTATCCGGC GCAGCTTTCG
GGCGGTCAGC AACAGCGTAT CGCGCTTGCC CGCGCGCTGG TGTTCGAACC GAAGCTCGTG
CTGATGGACG AGCCGCTCGG CGCGCTGGAT AAGCAGTTGC GCGAACACAT GCAGTACGAA
CTCAAATCGT TGCACGAGAA ACTCGGCGTC ACGTTCGTGT ATGTCACGCA CGATCAGGGC
GAAGCGTTGA CCATGTCCGA TCGCGTCGCC GTATTCGATA AAGGCATCGT GCAGCAACTC
GATACCGTGG ATCGGCTGTA CGAATCGCCG TGCAATGAGT TCGTGGCGAA CTTCATCGGC
GACAGCAACA AGCTGCGCGG CACGATCGCG AACGTCGACG GTGAGTATTG CGAATTTCAT
CTGATCGACG GCACGCGCCT TACCGGCCGC AATATCGGCG GCGCGCGAGC GGGTACGCCG
GCGGTCGCGT GCATCCGGCC CGAGCGCATG AAGCTCGGCA ACGGCTCGTC ACGTCCGGGC
GCCAATGCGC TCGCCGGTGA AGCCCGCGGG CTGATCTATT TCGGCGACCA CGTGCGCATG
CGTTGTGGTC TCCCGCAACA GGACGAGTGC TTCGTGAAGG TGCCGCTCGG CACCGGCGTG
CTCGACACCT TTGCGCCCGG CACACCGGTC GCACTCGAAT TCGCACCCGA GCATCTGCGG
GTTTTCGCAG GGGCGTGA
|
|---|
| Protein sequence | MKTEDVIVSF RGVRKTYDGE TLVVKQLDLD IYQGEFLTLL GPSGSGKTTC LMMLAGFEFP
TGGEIWLDGT LLNTVPPHKR NIGMVFQNYA LFPHLTVEQN VAYPLTVRKI SAEERAHRTN
NALKMVRMES FAKRYPAQLS GGQQQRIALA RALVFEPKLV LMDEPLGALD KQLREHMQYE
LKSLHEKLGV TFVYVTHDQG EALTMSDRVA VFDKGIVQQL DTVDRLYESP CNEFVANFIG
DSNKLRGTIA NVDGEYCEFH LIDGTRLTGR NIGGARAGTP AVACIRPERM KLGNGSSRPG
ANALAGEARG LIYFGDHVRM RCGLPQQDEC FVKVPLGTGV LDTFAPGTPV ALEFAPEHLR
VFAGA
|
|---|
| |