| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6875 |
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| Symbol | |
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| ID | 6277983 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 3235195 |
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| End bp | 3236880 |
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| Gene Length | 1686 bp |
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| Protein Length | 561 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 642617902 |
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| Product | type II and III secretion system protein |
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| Protein accession | YP_001890538 |
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| Protein GI | 187921506 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.52559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 0.294616 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGTCA AAAGCAATGC GGCGCCGTTG CGCCGCCGGG TTATGCCGTC TGTCCTTATC
GGCATGTTGT TGTGCGAAGC CGCGCCGGCC GCGCTCGCGC AGGTCGGCTA CTCCGCCGCA
ATGGCGAGCC CGTCAGCAAG CACGCGCGTG CTCGAAATGT TCCGCGGCGA AGTGCGGATC
CTGCACGTTC CGGGCACGAT CAAGCGTATC GCCATCGGCA ATGGGAAGCT GGTCACCGCT
AACGTGGTCG ACGGCAGTCT GATGTTGCTC GGCGAGCGCG ACGGCATCAC CTCGCTGGTC
GTGTGGAACG AAAAGGGCAT CGCATTACAA ACCACGGTGC GCATTGCCAA GGCTGAAGTG
AGTGCCTCGG TCGAGCAGTT GCGCGCCGTG CTTCAGTCAG TGTCGGGTTT GCATATCGAC
GCCATCGGCT CGAATATCGT GTTGTCCGGT GTCATTCACC GCGATATGAC GGGCATCGTC
AAGGCTGCCA CGCAAGACAT GCAGAACGTG ATCGACACCA CCAAGGTCGA CGAGGGCGAC
GCCTTGCGCA AGACCGTCCA CTTCAAGGTG CAGATCATGG AAGTCACGCG TACCGGTCAG
CGCAATCTCG GCATTGCGTG GGACAGCGCG TTCAAGGGCC CGCAGATCGG CGGCGCAGCG
AGTGTCGCGA CAGGTGCGGC GAAGGCCGTC ACGGCGGGTA CGAGCTACTT CCTCGCGGGC
ATTGCGTCGA ACATCACCTC GCAGATAAAT TTTGCCGTCG AGAACGGCGA CGCCTACGTT
CTCGCCGCGC CCGAACTGAA TACGAAGAGT GGCGGCACGG CGAGCTTCCT GGCGGGCGGC
ACGGTGCCGA TTCCGCAATC GGGCGCGCTC GGCACGACCA GCGTCGAATA CAGGGACTAC
GGGATCAAGT TGAGCATCGT TCCTGTTGTC GACGCGAACA ACATCATTTC GGCGCACCTC
ACTACGGAGA TCAGTCAGAT CGATCCGTCG GTGACCTATG GCGGGATGCC GGGTTTCCTG
ACTCGCAATA CGACCTCGGA TATTTCCATG CGCGCCGGCG AGACACTCGC CATTTCCGGG
CTGGTCAGCG CGGACGCCGC CAATGACACG ACCGGCATGC CGTTTCTCAG CAAGGTTCCC
ATCATCGGCC AGTTGTTCCG GTCGGATGCC TTTCGCGCGA AGAAGAGCGA CCTCGTCATT
TTCGTGACGC CCGTCATCTC GGATCCTGAA CTCTCGCCGA ACGCCGATTT GCTGGCGCGC
GCCGATAGAC TCGACAAGAG CTTCCGCGAA GAGTACGGCA ACCCCAATCC GCTCGTCGCA
GACGCGGACA AGGAGACGCA CACCACCGCG GTGCGCCCGC CGATCAGGGC TACGCCCGCA
CTGCTTCCCG AGCCTATTCG CAGCACGCCG CCGCAAGCCG TTGAAGCGCC ACAGGCCGCA
GTGCCCGTCG AGGCTCCCGC GCAAGTCGCG ACGCCCGCGC CGCTTCCCGC TTCGCCGCGA
ATGCCAACCG AGGCGGCGCC ACAACGCCCG GCTGCCAGCA CGCCGCCGGC GGGTGTTGCC
GAAGCGCTGC GCATGTTGAA CGACACACAG CAGCATCCCG CGCCGACGCA CGACGCCGTG
CGGCCCAATT CGGACGGCAA GGTGCCGCCG GGGCAAATCG GCGCGCTCGG CACGTCGAAC
GATTGA
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| Protein sequence | MKVKSNAAPL RRRVMPSVLI GMLLCEAAPA ALAQVGYSAA MASPSASTRV LEMFRGEVRI
LHVPGTIKRI AIGNGKLVTA NVVDGSLMLL GERDGITSLV VWNEKGIALQ TTVRIAKAEV
SASVEQLRAV LQSVSGLHID AIGSNIVLSG VIHRDMTGIV KAATQDMQNV IDTTKVDEGD
ALRKTVHFKV QIMEVTRTGQ RNLGIAWDSA FKGPQIGGAA SVATGAAKAV TAGTSYFLAG
IASNITSQIN FAVENGDAYV LAAPELNTKS GGTASFLAGG TVPIPQSGAL GTTSVEYRDY
GIKLSIVPVV DANNIISAHL TTEISQIDPS VTYGGMPGFL TRNTTSDISM RAGETLAISG
LVSADAANDT TGMPFLSKVP IIGQLFRSDA FRAKKSDLVI FVTPVISDPE LSPNADLLAR
ADRLDKSFRE EYGNPNPLVA DADKETHTTA VRPPIRATPA LLPEPIRSTP PQAVEAPQAA
VPVEAPAQVA TPAPLPASPR MPTEAAPQRP AASTPPAGVA EALRMLNDTQ QHPAPTHDAV
RPNSDGKVPP GQIGALGTSN D
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