| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6830 |
|---|
| Symbol | |
|---|
| ID | 6278616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3178630 |
|---|
| End bp | 3179973 |
|---|
| Gene Length | 1344 bp |
|---|
| Protein Length | 447 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642617857 |
|---|
| Product | protein of unknown function DUF21 |
|---|
| Protein accession | YP_001890493 |
|---|
| Protein GI | 187921461 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1253] Hemolysins and related proteins containing CBS domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 0.726657 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATCCAGG TCGTCGCCCT TATCGGTGCG TTGTTTCTCG TTGCCCTCAA CGGCTTCTTT
GTTGCCGCTG AATTCGGTCT GGTCAAACTT CGGCAGACGC GCGTGCAAAG CCTTGCCGCC
AAACATGGCA TGCGCGGGCG TCTGCTGGCC AAGGTGCACG GGCGTCTCGA CGCCTATCTG
TCCGCCTGCC AGCTCGGCAT CACACTGGCG TCGCTCGGGC TCGGCTGGAT CGGCGAGCCC
GCGTTCGCGG AGTTGCTCAC GCCGGTCTTC AGCCTGCTCG GCGTGGAATC GGAGAAGCTG
ATCCACGGAA TCTCGCTGTT CTTCGCGTTC TCGTGCATTT CTTTCCTGCA CATCGTCGTG
GGAGAACTCG CGCCGAAGTC GCTGGCCATT CGCGAGGCGG AAAAGGTTTC GCTTTGGGCC
GCCACGCCGC TTTACGGCTT TTACTGGGCC ATGTATCCGG CAATCTGGGT GCTCAATTCG
AGCGCCAACG CCGTGCTTAA ACTCGCCGGG CTCGACGCCG ATCACGGCCA CGACTCGCAC
TACTCCACTG ACGAACTCAA GCTGATCCTG CGCGGCCGCC GCGCCAACGT CGCCACGGAA
CTGGGTTCGG CCGACGGTGC CTACAGTCAG GACGAGTGGA ACACGATCGC GCACTCGCTC
GATTTTTCGC GCATGACCGT GTCGGACCTC ATGCGTCCGG CCTACGAGAT GATCGGCTTG
CGCCGCGATT TGCCGTTGCG CGACAACATG CAGGTGGTGG CGCGGCATCG CTTCAGCCGT
TATCCGCTGT TCGAAGATGC GTCCGGCGAG CGCGTGGCCG GCATGATCCA TTTGAAGGAC
TTGCTGCTGG CCCGCCATGC GGGCAGCACA CTCGAGGATC TCTCCAAATA CGCGCGGCCC
GTGCAATACG TCACGCCGGA AATGCCGGCG CTCGAATTGT TTCGCCGCTT CCGCAAGGGC
GCGCCGCACT TCGCGCTGGT CGGCCACAAG CGGGAGAAGC CTATCGGTTT CCTGACGCTC
GACAATCTGC TCGGCGCGCT GGTGGGCCAG ATCCACGACG AGTTCCGTCA GGGCGACGCC
GACTGGACGC GCATGGACGA CGGCACCTTG ATGGGCAAGG GCAGCTTGCC GGTGGTGTCG
CTGGAACGCG CGTTGGGGAT CGACATCGAC GAAGGCAAGG CCGAATCGGT CGGCGGCCTC
GTGATTCAGG CGCTTAACGA TCTGCCCAGC GAAGGGCAGC GAGTCGAGTT CGATCGCTTC
GACGTCGTGG TCAAGAAAAT GAAAGGGCCG CGTATCGTGC TCGTGCGGGT TTATCCGAAA
ACCTTCGACG ACGAAGGTGG TTGA
|
|---|
| Protein sequence | MIQVVALIGA LFLVALNGFF VAAEFGLVKL RQTRVQSLAA KHGMRGRLLA KVHGRLDAYL
SACQLGITLA SLGLGWIGEP AFAELLTPVF SLLGVESEKL IHGISLFFAF SCISFLHIVV
GELAPKSLAI REAEKVSLWA ATPLYGFYWA MYPAIWVLNS SANAVLKLAG LDADHGHDSH
YSTDELKLIL RGRRANVATE LGSADGAYSQ DEWNTIAHSL DFSRMTVSDL MRPAYEMIGL
RRDLPLRDNM QVVARHRFSR YPLFEDASGE RVAGMIHLKD LLLARHAGST LEDLSKYARP
VQYVTPEMPA LELFRRFRKG APHFALVGHK REKPIGFLTL DNLLGALVGQ IHDEFRQGDA
DWTRMDDGTL MGKGSLPVVS LERALGIDID EGKAESVGGL VIQALNDLPS EGQRVEFDRF
DVVVKKMKGP RIVLVRVYPK TFDDEGG
|
|---|
| |