Gene Bphyt_6818 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_6818 
Symbol 
ID6278160 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp3155111 
End bp3156712 
Gene Length1602 bp 
Protein Length533 aa 
Translation table11 
GC content62% 
IMG OID642617846 
Productglucose-methanol-choline oxidoreductase 
Protein accessionYP_001890482 
Protein GI187921450 
COG category[E] Amino acid transport and metabolism 
COG ID[COG2303] Choline dehydrogenase and related flavoproteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones32 
Fosmid unclonability p-value0.242551 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAAACA AAAATTCCGC CGACATCGTC GTGGTCGGTT CGGGCGTGGC GGGCGGACTG 
GTCGCGCATC AGATGGCGCT CGCCGGCGCG TCGGTGATTC TGCTCGAAGC CGGGCCGCGC
ATTCCGCGTT GGCAAATCGT GGAGAACTTC CGCAACTCGC CGGTCAAGTC GGACTTCGCG
ACGCCGTATC CGTCGACGCC GTACGCGCCG CATCCCGAGT ACGCGCCCGC CAACAATTAT
CTGATCCAGA AAGGCGACTA TCCGTATAGC TCGCAGTACC TACGGCTGGT GGGCGGCACG
ACATGGCACT GGGCGGCGGC CGCATGGCGG CTGTTGCCGT CGGACTTCCA GTTGCACAAG
CTGTACGGCG TGGGACGCGA CTGGCCGTAT CCGTACGAAA CGCTGGAGCC CTGGTATTCG
GCCGCTGAAG TGCAACTCGG CGTGTCGGGC CCGGGCAATT CGATCGATCT CGGTTCGCCG
CGCTCGAAAC CTTATCCGAT GAACCCGCTT CCGCTTTCGT ACATGGATCA GCGATTCAGC
GACGTGCTCA ACGCGCAAGG CTTCAAGGTC GTGCCCGAGC CGGTGGCGCG CAACAGCCGT
CCGTACGATG CGCGGCCTAC CTGCTGCGGC AATAACAACT GCATGCCGAT CTGCCCGATT
GCCGCGATGT ACAACGGCGT CGTGCATGCG GAAAAAGCCG AACAGGCCGG CGCGAAACTG
ATTCCGGAAG CCGTGGTGTA TCGCGTCGAA GCGGACAACA AAGGGTTGAT CACGGCGGTC
CATTACAAGG ACCCGAACGG CAACAGCACG CGCGTAACCG GCAAACTGTT CGTGCTTGCC
GCGAACGGCA TCGAAACGCC GAAGCTGATG CTGATGTCGA CATCCGATAA ATTCCCGCAT
GGCGTCGGCA ACAGTTCCGA TCAGGTGGGC CGCAACCTGA TGGATCATCC GGGCACGGGT
GTTACGTTCC TCGCCAATGA AGCGCTGTGG CCCGGACGCG GACCGATGGA GATGACCTCG
ATCGTCAACT TCCGCGATGG CGCGTTCCGT TCGGACTACG CCGCAAAGAA ACTGCATCTC
TCGAACGGCG TGCCGACCAT GAGCGTGACC GCCGACCTGT TGAAAAAAGG CCTGACCGGC
GCCGAACTCG ACCGGCAGAT ACGCGACCGC GCGGCACGCA CGCTGAACAT CAACAGTTTC
CACGAGCATC TGGCCGAGCC GCAGAACCGC GTGGTGCCGT CGGCGGACCA CAAGGATTCG
CTCGGCATTC CGCAGCCGGA AATCTATTAC TCGATCAACG ATTACGTAAA GAAAAGCGCG
GCCAACACGC ACGAGTTGTA TGCGCAGATC GCCGCGCTGT TCGGCGGCGC CGAGGTCACT
TTCGACGACA CCTTCGCGCC GAACAATCAC ATCATGGGCA CCACGATCAT GGGCAGCGAT
CCGGCGGATT CGGTCGTCGA TGCGGACTGC CGCACGCATG ACCACTCCAA TCTGTTCATC
GCCAGCAGCG GCGTGATGCC GACCGCGGCA TCGGTGAATT GCACGCTGAC GATCGCGGCC
TTGTCGCTGA AGCTGGCCGA CAAGCTCAAG CGTGAAATCT GA
 
Protein sequence
MANKNSADIV VVGSGVAGGL VAHQMALAGA SVILLEAGPR IPRWQIVENF RNSPVKSDFA 
TPYPSTPYAP HPEYAPANNY LIQKGDYPYS SQYLRLVGGT TWHWAAAAWR LLPSDFQLHK
LYGVGRDWPY PYETLEPWYS AAEVQLGVSG PGNSIDLGSP RSKPYPMNPL PLSYMDQRFS
DVLNAQGFKV VPEPVARNSR PYDARPTCCG NNNCMPICPI AAMYNGVVHA EKAEQAGAKL
IPEAVVYRVE ADNKGLITAV HYKDPNGNST RVTGKLFVLA ANGIETPKLM LMSTSDKFPH
GVGNSSDQVG RNLMDHPGTG VTFLANEALW PGRGPMEMTS IVNFRDGAFR SDYAAKKLHL
SNGVPTMSVT ADLLKKGLTG AELDRQIRDR AARTLNINSF HEHLAEPQNR VVPSADHKDS
LGIPQPEIYY SINDYVKKSA ANTHELYAQI AALFGGAEVT FDDTFAPNNH IMGTTIMGSD
PADSVVDADC RTHDHSNLFI ASSGVMPTAA SVNCTLTIAA LSLKLADKLK REI