| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6759 |
|---|
| Symbol | |
|---|
| ID | 6279786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3091846 |
|---|
| End bp | 3092829 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 642617787 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_001890424 |
|---|
| Protein GI | 187921392 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02424] pca operon transcription factor PcaQ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.405841 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACGCA GCCTCGCGGA CAGCCGCGTC AAATTCCGTC ATCTCCAGTG CTTTCTGGCC
GTCGCGCAGT TCGGCAGCGT CCAGCGGGCG GCCGACAGCC TGTCGATCAC CCAGCCCGCG
GTCTCCAAGA CGGTGGCCGA ACTGGAAGCG ATTCTCGGCG TGAAGCTGTT CGAGCGCGGC
CGCCACGGCG CCGTGCCGAC CCGCGAGGGG CAACTCTTCA TGCCGCACGC GAGCGCTTGC
GTCAGCGCGC TGCGCCAAGG CGTCGATCTG CTGGCGCGCG CGGAAGGCGC GGCCGCCGCC
ACGCTGGAAA TCGGCATTCT GCCGACCGTC GCGGCGGCGT TGATACCGCC GGTGCTGAAG
CGGTTCGCCG CGCTCTGGCC GCGCGTGATT GTGCGCCTCG CGACGGGCGC CAACCCCGAA
TTGCTCGAGC GCCTGAAAGC GGGCACGATC GAATTTGCGA TCGGTCGGCT GGCCGATCCC
GAGCGGATGG TCGGGCTCAG TTTCGAGCAG CTGTTTAGCG AGCCGTTGAT TGCGGTGGTC
CGTGCCGGGC ATCCGCTGGC AACGGGCGCG GGGTTGCCGG CCGCGTCGCT CGAAGATTTT
CCAGTGGTGT TGCCGCCGTT CGGCACATTG ATCCGGCAAT CGGCGGACAG TCTGTTGAGC
GCTTGGGGCG TGCCGCCGTT GTCGGCGTTC ATCGAGGTAT TGTCGGTTTC GACGGGCCGC
GCGTTGACGC TCGAGAACGG CGCCGTGTGG TTCGTTCCGC TGAGCGCAGT CGAATACGAA
CTGGCGCAAG GCATGCTGGT ACGTTTGCCA TTGCCCTTCG CCGGCACTGG CGAGCCGGTG
GGGTTGATCC GGCGCTCGGA CACGCAGCCG TCGCCGGTCG GGCGGGCGTT TATCGAGGCG
GTGCGTGAAG TCGCGCAGCA GCGCATGGCT TCGAGTGCGG ATAAGGCGAC AGGAAAAAGG
GCGCAGAAGC GGAGCCGTAA ATAG
|
|---|
| Protein sequence | MQRSLADSRV KFRHLQCFLA VAQFGSVQRA ADSLSITQPA VSKTVAELEA ILGVKLFERG
RHGAVPTREG QLFMPHASAC VSALRQGVDL LARAEGAAAA TLEIGILPTV AAALIPPVLK
RFAALWPRVI VRLATGANPE LLERLKAGTI EFAIGRLADP ERMVGLSFEQ LFSEPLIAVV
RAGHPLATGA GLPAASLEDF PVVLPPFGTL IRQSADSLLS AWGVPPLSAF IEVLSVSTGR
ALTLENGAVW FVPLSAVEYE LAQGMLVRLP LPFAGTGEPV GLIRRSDTQP SPVGRAFIEA
VREVAQQRMA SSADKATGKR AQKRSRK
|
|---|
| |