| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6724 |
|---|
| Symbol | |
|---|
| ID | 6277673 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 3047328 |
|---|
| End bp | 3049070 |
|---|
| Gene Length | 1743 bp |
|---|
| Protein Length | 580 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642617753 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_001890390 |
|---|
| Protein GI | 187921358 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 51 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAACAGA GGAGACGAAT CGTCACGCTC GCCGTGGCAG GCGTCATCGC GACTGGCTTC
ACGAGCCACG CGGCGATCGC CGGCACGCCC GAAGCGCAGA AGTGGGTCGA TAGCGAGTTT
CAGCCCAGCA CGCTATCGAA ACAGCAGCAG ATGGACGAGA TGAAATGGTT CATCGATACC
GCTGCGACGC TGAAATCGGC AGGCGTCAAA GAAGTGCACG TGGTATCCGA AACACTCGAC
ACGCACATGT ACGAATCGAA AACGCTGGCC AAGGCGTTCA CCGAAATCAC CGGCATTTCA
GTCAAGCACG ACATCATTCA GGAAGGCGAC GTCGTCGAGA AACTGCAGAC TTCGATGCAG
TCCGGGCAGA GCATTTACGA TGGCTGGATT TCCGACTCCG ACCTGATCGG CACGCATTAT
CGCTATGGCG TGATCATGCC GCTGTCCGAC TATATGACCG GCGAAGGCAA GAAATATACG
AACCCGGGTC TCGACATCAA AGACTTCATC GGCACGAGTT TCACGACCGC GCCGGACAAG
AAGCTCTATC AATTGCCCGA CCAGCAGTTC GCAAATCTTT ACTGGTTCCG CGCCGACTGG
TTCGCGCGCA AGGACCTGCA GGACAAGTTC AAGGCGAAAT ACGGCTACGA GCTGGGCGTG
CCGGTGAACT GGTCCGCGTA TGAGGACATC GCCGAATTCT TCACGAACGA CGTGAAGAAT
ATCGACGGCG AAAAAGTCTA TGGGCACATG GACTACGGCA AGAAAGACCC GTCGCTGGGA
TGGCGCTTTA CCGATGCATG GCTCTCGATG GCGGGCGAAG CCGACAAGGG CATTCCGAAC
GGTATGCCGG TCGATGAGTG GGGCGTGCGC GTCACGCCGG ACGGTTGCCA TGCGGTGGGC
GCGTCGGTCT CGCGCGGCGG CGGCACGAAC AGTCCGGCCG CGGTGTTCGC GACCACCAAA
TACATCGACT GGCTGAAGAA GTTCGCACCG CCCGAAGCCT CGGGCATGAC GTTCAACGAA
GCGGGACCGG TGCCGGCGCA AGGCAAGATC GCCCAGCAGA TCTTCTGGTA CAGCGCGTTT
ACCGCGTCGA TGCTGAAACC CGGCAACGTG ACGAACGCGG ACGGCACGCC GAAGTGGCGG
ATGGCGCCCT CGCCGCACGG TCCGTACTGG AAGGACGGCA TGCAGAACGG CTATCAGGAC
GTCGGTTCGT GGACCTTCTT CAAGTCGACG CCGCCGAACC AGCGCGCTGC CGCGTGGTTA
TACGCGCAGT TCGTCACGTC CAAAACGGTC TCGCTGAAGA AGTCGATTAC CGGTCTCACG
TTCATCCGCG ATTCCGACAT TCATAGCGAT TACTTCACGA AGAACGCGGA CAAATACGGC
GGCCTGATCG AGTTCTATCG AAGCCCGGCG CGTGTCGCGT GGACGCCGAC CGGCAACAAC
GTGCCCGATT ATCCGAAGAT GGCGCAACTG TGGTGGAAGA ACGTCGCGAC GGCAGTGGCC
GGCGAAAAGA CACCGCAAGC CGCGATGGAC AATCTGGCAA AGGAAATGGA CCAGGTGTTG
GGCCGTTTGC AGCGCGCGGG GATGAAGGTC TGCGCGCCGG AGCTGAATCC GGAAAGCTCT
CCGGACAAAT GGCTGTCGGA TCAGCACGCA CCGTGGAAGA AGCTGGCGAA CGAGAAGCCG
AAAGGCGAAA CGGTCAAGTA TGACCAGCTG CTGACTGCGT GGAAGCAGGG GAAGGTGCGG
TAA
|
|---|
| Protein sequence | MQQRRRIVTL AVAGVIATGF TSHAAIAGTP EAQKWVDSEF QPSTLSKQQQ MDEMKWFIDT
AATLKSAGVK EVHVVSETLD THMYESKTLA KAFTEITGIS VKHDIIQEGD VVEKLQTSMQ
SGQSIYDGWI SDSDLIGTHY RYGVIMPLSD YMTGEGKKYT NPGLDIKDFI GTSFTTAPDK
KLYQLPDQQF ANLYWFRADW FARKDLQDKF KAKYGYELGV PVNWSAYEDI AEFFTNDVKN
IDGEKVYGHM DYGKKDPSLG WRFTDAWLSM AGEADKGIPN GMPVDEWGVR VTPDGCHAVG
ASVSRGGGTN SPAAVFATTK YIDWLKKFAP PEASGMTFNE AGPVPAQGKI AQQIFWYSAF
TASMLKPGNV TNADGTPKWR MAPSPHGPYW KDGMQNGYQD VGSWTFFKST PPNQRAAAWL
YAQFVTSKTV SLKKSITGLT FIRDSDIHSD YFTKNADKYG GLIEFYRSPA RVAWTPTGNN
VPDYPKMAQL WWKNVATAVA GEKTPQAAMD NLAKEMDQVL GRLQRAGMKV CAPELNPESS
PDKWLSDQHA PWKKLANEKP KGETVKYDQL LTAWKQGKVR
|
|---|
| |