| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6719 |
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| Symbol | |
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| ID | 6278673 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 3040903 |
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| End bp | 3044016 |
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| Gene Length | 3114 bp |
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| Protein Length | 1037 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642617748 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and Chase sensor(s) |
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| Protein accession | YP_001890385 |
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| Protein GI | 187921353 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.556524 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACTGGG CACGCCTCGT CCTGATTCCG TTTCTGGTCC TCTCCGCCGC GCTGAGCGTG
ACGTGGATGC TGTGGGACCA TGAGCGGCAA GCTGCCCGTC ATGAACTGCT GTCCCAGTTC
AACTATTCGC TGGGCGACGC GGTCAGCCGC ATCGAGCAGC GCATGGGCAC GTACGAGCTC
TTGTTACGCG GTGTGCAGAG CCTGTTCGCC GCGACAGGCG AGATCGACCG CGCCCGGTTT
CGTGACTACG TCGGCACGCT CAATCTCGAC GCCAACTTCT CCGGCATCCA GGCGATCGGT
ATCGTTGCGT GGGTGCCGGC GACGCAAATG GTCGAGCATA TCGCGTCGAT GCGCCGGCAA
GGCGTGCCCG ACTACGCGAT CGAGCCCAAA GGCTCGCGCG AGGACTACGC GCCGATCATC
CAGCGCGAGC CGTTCATCGG CATCAATCGC GCGGCGCCCG GTTTCGATGC ATGGGCCGAC
CCGGTGCGGC GGCGTGCGTT GGAGCAGGCG CGCGACTCCG GCATGGCGAC CCTTTCCGGC
AAGGTTCGCC TCTCGGTGGA CTCCGGCAAT GCTCGCCCCG GATTCATCAT GTACCTGCCG
ATCTATGCAC GAGGCCAGCC GCAAGACAGC GTCGCCCAGC GCCGCGCGCA TCTGGTCGGC
TGGGTGTACG CCTCGTTCCG CATGCACGAC GTCATCGCCA GCCTGTACGG CGAGCAGCCG
CCCGGCCTCA CTATCGCGAT TTACGATGGC GTCGAAACGT CGGCCGCCGC GCTGTTGCAC
AAGACGCCTG AGGCGCCCGG TCATCATCGG GTCACGGACA TGGCGGCCAA CGAATATCTG
GTGGTGGGCG GCCATGACTG GACACTCTCG ATGAACGCCC AGGACGACTT CAAGGCTCGC
TTCGGCCGTA ACGCCGCGCT GCCTATCGCC AGCACCGGCA CGGGCCTGAG CCTGCTGCTG
GCGCTGCTCA CCTGGCTGAT GATGACCGGC CGCGGCCGCG CGATGCGGCT CGCCTCGGCA
ATGACAAAAG AATTGCGCGA GAACGAGGAG AAATTCCGCG CGATTGCCGA CTGTACGGTC
AACTGGGAAA TCTGGTGGGG AACCGACGGC AAGCCGCGCT GGATCAACTC GGCGGTGGAG
GCGTATATCG GCTATACGGT CGACGAGTGC ATGGCCTTAC CGGATTTTGC CGGCACCGTG
ATCTATCCCG CGGACATTCC CCGCGTGGCG CCTGAATTCC AGAAGGCGCT ACAGGGTTTG
CGCGGCGACG ACCTCGAGTT TCGCTGCGTT CGCAAGGACG GCTCGCTCAT GTGGCTGTCC
GCGTCCTGGG TTCCCATTAC CGATTCCAAG GGCGAGTTCA TCGGCTTTCG CACGAGCGGC
CGCGACATTA CCGAGCGCAA GCAGGTCGAG GCTGAACTGC GCATTGCCGC TGTCGCATTC
GACTCGATGG AACCGATGAT GATCACCGAC GCGAGCGCCA CTATTCTGCG CGTGAACTCG
GCCTTCACCG AATGTACCGG CTATACCGCC GAGGAGATCG TGGGCCAGAC ACCGCGCGTG
CTTCGATCCG GCCGCCACGA CGACGCATTC TTCCAGGAGA TGTGGGAAGA GATTCACAGT
GCGGGCGGAT GGCAAGGAGA AGTCTGGGAC CGCCGCAAGA ACGGCGAGGT GTACCCGAAA
TGGCTCACGA TCTCCGCCGT GATGAGCGAC AACGGCACTG TCAGTCACTA TGTCGGCACG
CATCACGACA TTACCGAACG CAAGATCGCG GAAGAGCGGA TCAAGGAATT GGCCTTCTTC
GATGCGTTGA CCCGCTTGCC CAATCGCACC CTGCTTCTGG ATCGCCTGAG GCAGGCGATC
ACGGCCAGTG CCCGCAATGA AGCGTGTGGC GCGCTGCTGT TCATCGACCT GGATCACTTC
AAGACGTTGA ACGATACCCT GGGTCACGAC AAGGGCGATC TGCTGCTGCA GCAAGTGGCG
CGGCGTCTGG CAGACAGCGT ACTCGAAAGC GACACCGTGG CGCGAGTGGG CGGCGACGAG
TTCGTGGTGG TGCTCGGCAA TCTGCACAAG AACCGCCAGG AGGCGGCCAA CCAGACGGAG
GCCGTGGGCG AAAGAATCCT CGCTGTTCTG GGCAGTCCGT ATCACCTTGG CAAGATCGAG
TACCGCACGA GTGCTAGCAT CGGCGCCACG GTGTTCAGAG GGCATCAGGC CTCGATCGAC
GAACTGCTCA AGCAGGCCGA CCTCGCGATG TACAAGTCCA AGGAACGGGG ACGCAACGCC
GTGCGTTTCT TCGATCCCGA CATGCAAACC GTCGTGGTGC AGCGAGCCGC GCTGGAAGCG
GGCTTGCGCA ATGCCATCGA GGACAATCAG TTCCTGCTCC ACTACCAGGC GCAGGTCGTG
GGTACGCGCG TGACAGGCGC GGAAGCGCTG GTGCGCTGGC AGCATCCGCA GCGCGGTATT
GTGCCGCCCG CCGAGTTCAT TCCGCTGGCT GAAGAGACCG GACTGATCGT TGCGCTGGGA
AGCTGGGTGC TGGAGGCCGC TTGCGCGCAA CTGGCGCGAT GGGCTGCGCG GCCCGACATG
GCGCATCTCA CGATTGCGGT CAATGTCAGC GTCCAGCAGT TCCGCAAAGC CGATTTCGTG
GACAACGTAT TGACGATTAT CGGTCGCACC GGCGCGCGGC CCGACAGGTT GAAACTGGAA
CTGACGGAAA GCGTGCTGGT CGACAACGTG CAGGACATCA TCGAGAAGAT GAGTGCGCTG
AAAGCGAAAG GCATCGTCTT TGCACTCGAC GATTTCGGCA TCGGTTATTC GTCGCTGTCC
TATTTGAAGC GCCTGCCTTT GGATCAGTTG AAGATCGACC GCTCATTTGT GCGCGATGTC
CTGGTCGATT CCAACGACGC CGTGATTGCC AGAACCATCG TGGCGCTTGC GCGCAGCCTC
GGTTTGGGTG TGATCGCCGA AGGCGTGGAA ACAGAGGCTC AGCGGGATTT CCTCGCTGCA
GCGGGGTGCT ACGCGTATCA GGGCTATTAT TTCTGCCGCC CGCTTCCTAT CGAGGATTTT
GAGGCGCTGT TGAACAATGT GGAGACACGT CAGTGCGTGG CTGAGCGAAC GTGA
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| Protein sequence | MNWARLVLIP FLVLSAALSV TWMLWDHERQ AARHELLSQF NYSLGDAVSR IEQRMGTYEL
LLRGVQSLFA ATGEIDRARF RDYVGTLNLD ANFSGIQAIG IVAWVPATQM VEHIASMRRQ
GVPDYAIEPK GSREDYAPII QREPFIGINR AAPGFDAWAD PVRRRALEQA RDSGMATLSG
KVRLSVDSGN ARPGFIMYLP IYARGQPQDS VAQRRAHLVG WVYASFRMHD VIASLYGEQP
PGLTIAIYDG VETSAAALLH KTPEAPGHHR VTDMAANEYL VVGGHDWTLS MNAQDDFKAR
FGRNAALPIA STGTGLSLLL ALLTWLMMTG RGRAMRLASA MTKELRENEE KFRAIADCTV
NWEIWWGTDG KPRWINSAVE AYIGYTVDEC MALPDFAGTV IYPADIPRVA PEFQKALQGL
RGDDLEFRCV RKDGSLMWLS ASWVPITDSK GEFIGFRTSG RDITERKQVE AELRIAAVAF
DSMEPMMITD ASATILRVNS AFTECTGYTA EEIVGQTPRV LRSGRHDDAF FQEMWEEIHS
AGGWQGEVWD RRKNGEVYPK WLTISAVMSD NGTVSHYVGT HHDITERKIA EERIKELAFF
DALTRLPNRT LLLDRLRQAI TASARNEACG ALLFIDLDHF KTLNDTLGHD KGDLLLQQVA
RRLADSVLES DTVARVGGDE FVVVLGNLHK NRQEAANQTE AVGERILAVL GSPYHLGKIE
YRTSASIGAT VFRGHQASID ELLKQADLAM YKSKERGRNA VRFFDPDMQT VVVQRAALEA
GLRNAIEDNQ FLLHYQAQVV GTRVTGAEAL VRWQHPQRGI VPPAEFIPLA EETGLIVALG
SWVLEAACAQ LARWAARPDM AHLTIAVNVS VQQFRKADFV DNVLTIIGRT GARPDRLKLE
LTESVLVDNV QDIIEKMSAL KAKGIVFALD DFGIGYSSLS YLKRLPLDQL KIDRSFVRDV
LVDSNDAVIA RTIVALARSL GLGVIAEGVE TEAQRDFLAA AGCYAYQGYY FCRPLPIEDF
EALLNNVETR QCVAERT
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