| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6620 |
|---|
| Symbol | |
|---|
| ID | 6277754 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2929178 |
|---|
| End bp | 2930671 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642617652 |
|---|
| Product | putative circadian clock protein, KaiC |
|---|
| Protein accession | YP_001890289 |
|---|
| Protein GI | 187921257 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0467] RecA-superfamily ATPases implicated in signal transduction |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCCC GCCTTTCCTC GGGGATCGAT GGAATCGACG ACATCCTGGG AGGCGGTCTC
ACCCCACACC GCATGTACCT GGTAGAAGGT GCGCCTGGCA CGGGTAAAAC TACCTTGGCC
TTGCAATTCT TACTCAAGGG CGTCGAAGAA GGGCAGAGAG GCTTGTACAT CACGCTTTCC
GAGACCCGCT CCGAACTGAT TTCGGTAGCC GAAAGCCATG GGTGGAATAT CAGCGGCTTC
CATATTCTCG AACTGGTTTC GGACGAAGGT CTCGACCCGC AGTACGAGCA GACCGTGCTG
CATCCGGCCG AGGTCGAACT CGGCGAGACG GTGCGCAACG TCATCCAGCA GGTCGACGAA
CTCAAACCGG CGCGCATTGT GCTCGACAGC CTTTCCGAGT TGCGTCTGCT GTCGCAGAAC
CCGCTGCGAT ACCGGCGGCA GATTCTCGCG CTCAAGCGCT ATTTCGCCAC CCGTGAATGC
ACTGTGCTGC TGCTCGACGA CAATTCGTCC GATCCCGGCG ACGTGCAGTT GCACAGCATC
GCGCACGGCG TGATCAGCCT CGACAATCTC GTGCACGACT ACGGCGGCAA CCGGCGGCGC
ACGCGCATCG CCAAGATGCG CGGCATCAAA TTCCGCGAGG GTTACCACGA CTTCACGCTC
GACACGGGCG GCCTCCACGT CTATCCGCGC CTCGTCGCGG CAGAACATCA CACGACATTC
GATGCCGAGG TGGTCAGCAC CGGCACGCGG GGTCTCGACG CGCTGCTCGG CGGCGGTCTG
ATTCCCGGCA CCAATGCGCT GTTGATCGGC CCTTCGGGCG TCGGCAAGAC CACCACGGTG
GTGTCGTGCC TGATCGCGGC GCTCGAACGC GGCGAGCGCT GCGTCTACTA CGTGTTCGAC
GAAACCCTCG TCACGTTGAT GATTCGCTGC GCGGCGCTCG GCATGCATCT GGCGCCGCAC
GTCGAAAGCG GTCTGCTGAC GCTGCGTCAG ATCGATCCGG CGGAAATCTC GCCCGGTGAA
TTCGCCAGCG ACGTACGCCG CTCGGTCGAG AAGCACGGTG CGCGGTATGT CGCGATCGAC
AGCCTGAACG CCTATCTCCA GGCGATGCCC GGCGAGCGCT ATCTGCTGCT GCAAATGCAC
GAACTGCTCG GCTATCTGAA TCAGCAGGGC GTCATCACGA TGCTCGTGCT GGGACAGCAC
GGCATTATTG GCGAGGTGCA AAGCGATATC GACATCAGCT ATCTGAGCGA CGTGGTCGTA
CTGTTCCGCT ACTTCGAGCA CCACGGCGAA GTGCTCACGG CCGTGACGGC CGTCAAGAGC
CGCGCCAATT CCCATGAGCG CTCGATCCGC CAGTTCCGGC TCAGCCGCGA CGGCGTGGAA
GTCGGCGAGG CACTGCGCGA CTTCGAGGGC GTGCTATCCG GACTGCCGGC TTATCGCGGC
AGCACCGCGC TGCTCGGCAC AACAAACCGC GTCATCGAAT CGTCCGGGCA GTAA
|
|---|
| Protein sequence | MPARLSSGID GIDDILGGGL TPHRMYLVEG APGTGKTTLA LQFLLKGVEE GQRGLYITLS
ETRSELISVA ESHGWNISGF HILELVSDEG LDPQYEQTVL HPAEVELGET VRNVIQQVDE
LKPARIVLDS LSELRLLSQN PLRYRRQILA LKRYFATREC TVLLLDDNSS DPGDVQLHSI
AHGVISLDNL VHDYGGNRRR TRIAKMRGIK FREGYHDFTL DTGGLHVYPR LVAAEHHTTF
DAEVVSTGTR GLDALLGGGL IPGTNALLIG PSGVGKTTTV VSCLIAALER GERCVYYVFD
ETLVTLMIRC AALGMHLAPH VESGLLTLRQ IDPAEISPGE FASDVRRSVE KHGARYVAID
SLNAYLQAMP GERYLLLQMH ELLGYLNQQG VITMLVLGQH GIIGEVQSDI DISYLSDVVV
LFRYFEHHGE VLTAVTAVKS RANSHERSIR QFRLSRDGVE VGEALRDFEG VLSGLPAYRG
STALLGTTNR VIESSGQ
|
|---|
| |