| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6602 |
|---|
| Symbol | |
|---|
| ID | 6280427 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2908109 |
|---|
| End bp | 2909287 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 642617635 |
|---|
| Product | L-carnitine dehydratase/bile acid-inducible protein F |
|---|
| Protein accession | YP_001890272 |
|---|
| Protein GI | 187921240 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1804] Predicted acyl-CoA transferases/carnitine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 0.0727834 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGACCAC TCGACGGTAT CAAGGTCGTC ACGCTCGAAC ACGCAATCGC GGCGCCGTTC
TGTACCCGTC AACTCGCGGA TCTGGGCGCG CGGGTGATCA AGATCGAGCG GCCTGGTGTC
GGCGACTTTG CGCGCGGCTA CGACGAGCGC GTGCATGGAC TGTCGTCGCA TTTCGTTTGG
ACCAATCGTT CGAAGGAAAG CCTTGCGCTC GATCTGAAAC AGCCTGCCGC AGCGGAGATT
CTCGACGCCC TGGTCGCCGG CGCGGACGTA CTGGTGCAGA ATCTCGCCCC CGGCGCCGCG
GACCGGCTCG GTCTCGGTTA CGACACGCTG AGCAAGAAGT ATCCGAAGCT GATCGTCTGC
GATATTTCGG GCTATGGTTC CGACGGCCCG TATCGCGACA AGAAAGCCTA CGACCTGCTG
ATCCAGAGCG AATCCGGTTT TCTGTCGATC ACCGGCTCGC CGGGCGAGCC GGCCAAGGCG
GGATGCTCGA TTGCGGATAT TGCGGCGGGC ATGTACGCGT ACTCGAACAT TCTGAGCGCG
CTGCTGTTGC GTGGGCGCAC GGGGCGCGGC TGCCGCATCG ACGTATCGAT GCTGGAGAGC
ATGGTCGAGT GGATGGGTTA TCCGCTCTAT TACGCGATCG ACGGTCAAAC GCCGCCCGCG
CTCTCCGGCG CGGCGCACGC CACGATCTAT CCGTACGGCC CGTTTCCCGC GGGCGACGGC
AAGACGGTGA TGCTCGGTCT GCAGAACGAG CGCGAATGGA AGCTCTTTTG TGAACGCGTG
TTGATGCAGC CGGAACTCGC CACCGACGAG CGTTTCAACT CGAACTCGAA ACGCACGTCG
GCGCGCGACG CGTTGCGCGA GGTGATCGTC GCGGCTTTTG CGAAGCTGAG TGCGGCGCAG
GTCATCGAAC GGCTGGATAA TGCCGGCATC GCCAACGCGC AAATGAACTC GCTCGGCGAT
GTGTGGGCGC ATCCGCAATT GCAGGCGCGC GAGCGCTGGC ATGAAGTCGG CACGCCTGCG
GGCGTGGTGC CCGCGTTATT GCCGCCGGGT TTGCCGACCG ATGTCGACCC GCGCATGGAT
CCGGTGCCCG CGCTCGGCGA GCATACCGAC GCGATTTTGC GCGAACTCGG CTACGACAGC
GCGCGGATCG ACGCGCTGCG AGCCGCCGGC ACGATCTGA
|
|---|
| Protein sequence | MRPLDGIKVV TLEHAIAAPF CTRQLADLGA RVIKIERPGV GDFARGYDER VHGLSSHFVW
TNRSKESLAL DLKQPAAAEI LDALVAGADV LVQNLAPGAA DRLGLGYDTL SKKYPKLIVC
DISGYGSDGP YRDKKAYDLL IQSESGFLSI TGSPGEPAKA GCSIADIAAG MYAYSNILSA
LLLRGRTGRG CRIDVSMLES MVEWMGYPLY YAIDGQTPPA LSGAAHATIY PYGPFPAGDG
KTVMLGLQNE REWKLFCERV LMQPELATDE RFNSNSKRTS ARDALREVIV AAFAKLSAAQ
VIERLDNAGI ANAQMNSLGD VWAHPQLQAR ERWHEVGTPA GVVPALLPPG LPTDVDPRMD
PVPALGEHTD AILRELGYDS ARIDALRAAG TI
|
|---|
| |