| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6584 |
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| Symbol | |
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| ID | 6277725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 2882060 |
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| End bp | 2884057 |
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| Gene Length | 1998 bp |
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| Protein Length | 665 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 642617617 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001890254 |
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| Protein GI | 187921222 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 0 |
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| Plasmid unclonability p-value | 0.0000000125379 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | unclonable |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 0.0159529 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGAACCCTT TTGATCGCGA AGATTCGCAA CACGAAACCG CCGCCTACAC CGCCAAAGCG
CCTTCGGGCC GTACGGCCAA GGGCAAGGGC GCCGGTAAAG CGATCCCCGT GGCAGCCGAA
CTGCCGCCGC AGCAAGCCGA AGAACGTCAG CGCCAGATGC GCGCGCTGAT CCAGCTGGGT
AAGGAGCAAG GCTACCTGAC CCACGCGCAG ATCAACGACC ACCTGCCCGA CAACTTCGCG
CAGACGGCCG CTATCGACAG CATCGTCAGC GCGTTCAACG ACATGGGCGT GCAGGTCTAC
GAACAGGCGC CGGACGCGGA AACGCTGCTG CTCAACTCGA ACGCCCCGGC CGTCGTGTCG
GACGATCAGG CGGACGAGGA AACCGAAGTC GCCCTGTCCA CCGTCGATTC CGAATTCGGC
CGCACGACCG ACCCGGTGCG CATGTACATG CGTGAAATGG GCGCGACCGA GCTGCTGACG
CGCGCCGGCG AAATCGCGAT TGCGAAGCGC ATCGAAGACG GCCTGCATGA AATGGTGCAG
GCGATCGCCG CTTGCCCGCT CGCGATCTCG GCCATTCTGG CGAGCGCCCA GCAGGTTGCC
GACGGCGAGT TGCGCATCGA CGAACTGGTC GACGGTCTGA ATGAAGACAC CCTCGCCGCT
GAAGAAGACA GCACCGGCGC GGACGCATCT GCCGACGTCG ACGCCGACAC GGACAGCGAC
GACGACGAAG ACAGCGACGA CGACGTCGGC CCGGCGGATT CGTCGGCGGC GGACGAAGCG
CGCCTGAAGC AACTCACGAG CGACTGCCTC GAAATCTTCG CGCAGGTCGG CATGCTGTCC
GACCAGATGA ACGCATCGCA CACGCGCGGC GACGTCACCT CGAAGGCGTA CCAGCGTGCA
CGCGAAGAAA TCCAGCAGCA CCTCGCGAAG ATCCGCTTCA CGGCACGCAC CATCGACCGC
CTGTGCGGCG ACGTGCAGCA ACAGGTCGCG CAAGTTCGCG CGATCGAGCG CAACATTCTG
CAAATCGTCG TCTCGAAGAG CGGCATGCCG CGCGAGAAGT TCATCGAGTC GTTCGCCGGC
CATGAAGCCG ACCTCGGCTG GACGGAACGT GCGGCGCGCG GTGCGTCGTC GTACGGCGCG
GCGCTGGAGC GCCATTTGCC GGCAATTCAG TCCGAACAGC AAAAGTTGAT CGAAATCGAA
GCAACGGTTT CGCTGCCGCT GAAGCATCTG AAAGAGATCA ACCGCCAGAT GGTCGCGGCT
GAATCGAAGA TGCGCAAGGC GAAGAGCGAG ATGATCGAGG CGAATCTGCG TCTCGTGATC
TCGATCGCGA AGAAGTACGT GAACCGCGGC ATGCTGTTCC TCGATCTGAT CCAGGAAGGC
AACATCGGCT TGATGAAGGC GGTGGACAAG TTCGAATACC GTCGCGGCTG GAAGTTCTCC
ACGTACGCAA CGTGGTGGGT CCGCCAGGCG GTGACGCGTT CGCTCGCCGA CCAGGCTCGC
ACGATCCGCG TGCCGGTGCA CATGATCGAA ACGATCAACA AGCTGAACCG CATTTCGCGC
GAAATCCTGC AGCAGACCGG TCAGGAAGCG CATCCGTCCG TGCTCGCGGA ACGCATGGAA
CTCTCGGAAG AGAAGGTGCG CGGTATTCTG AAGATCGCGA AGCAGCCGGT ATCGATGGAA
ACGCCGGTCG GCGACGACGG CGACGCCACG CTCGGCGACA TGATCGAAGA CTCGGCAGCG
TCCTCGCCGG CCGACGCCGC GATGCAAGCC GACTTGCGCG CCGCCATCGA CGACGCGCTC
GACTCGCTGT CGCCGCGCGA AGCCAAGGTG CTGCGTATGC GTTACGGCAT CAATACGAAG
TCGGACCACA CGCTCGAAGA AGTCGGCAAG CAGTTCGACG TCACGCGTGA ACGGATTCGT
CAGATCGAGA GCAAGGCCAT GCGCAAGCTG ATGCACCCGA GCCGCGCGGA CCGCCTGAAG
TCGTTCCTCG ACCGCTAA
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| Protein sequence | MNPFDREDSQ HETAAYTAKA PSGRTAKGKG AGKAIPVAAE LPPQQAEERQ RQMRALIQLG
KEQGYLTHAQ INDHLPDNFA QTAAIDSIVS AFNDMGVQVY EQAPDAETLL LNSNAPAVVS
DDQADEETEV ALSTVDSEFG RTTDPVRMYM REMGATELLT RAGEIAIAKR IEDGLHEMVQ
AIAACPLAIS AILASAQQVA DGELRIDELV DGLNEDTLAA EEDSTGADAS ADVDADTDSD
DDEDSDDDVG PADSSAADEA RLKQLTSDCL EIFAQVGMLS DQMNASHTRG DVTSKAYQRA
REEIQQHLAK IRFTARTIDR LCGDVQQQVA QVRAIERNIL QIVVSKSGMP REKFIESFAG
HEADLGWTER AARGASSYGA ALERHLPAIQ SEQQKLIEIE ATVSLPLKHL KEINRQMVAA
ESKMRKAKSE MIEANLRLVI SIAKKYVNRG MLFLDLIQEG NIGLMKAVDK FEYRRGWKFS
TYATWWVRQA VTRSLADQAR TIRVPVHMIE TINKLNRISR EILQQTGQEA HPSVLAERME
LSEEKVRGIL KIAKQPVSME TPVGDDGDAT LGDMIEDSAA SSPADAAMQA DLRAAIDDAL
DSLSPREAKV LRMRYGINTK SDHTLEEVGK QFDVTRERIR QIESKAMRKL MHPSRADRLK
SFLDR
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