| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6456 |
|---|
| Symbol | |
|---|
| ID | 6279134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2727645 |
|---|
| End bp | 2728400 |
|---|
| Gene Length | 756 bp |
|---|
| Protein Length | 251 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642617491 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001890134 |
|---|
| Protein GI | 187921102 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.000000225653 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.0000000041248 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGAACCGGT TGGCCAATAA GATTGCATTC ATCGCTGGAG GTGCTGGAGG CATCGGAGCG
GCCGCCGCGC ACCTGTTTGC GCGTGAGGGT TGTCAGGTTG CGATCGGCGA TCGCGACTTC
GACGAGGCAC GCCGCACCGT CGAGGCAATC AAGCAAGAGG GCGGACGCGC CGCTGCTTTT
CCCCTTGATG TAACGCAGGA GGACAGTGTA CGGGCTGCCA TCGGCGACGC AGTCGAGGCG
TTCGGCGGAC TGGACGTGCT TTACAACAAT GTTGGGGGCT CGTCCACCAA AGATGCCTCG
GTCACCGAAG CGCCACTTGA AGAGTTCTGG CGCTGTATCA ACGTCGACCT GTTTGGCACG
TGGCTGGGCT GCCGCCACGG TATTCCCGAG CTGATCAAAC GCGGAGGAGG TTCGGTGATC
AACACGTCGT CGATCCTTGC CTTGATGGGG TCGCCAAATA AGGACGCCTA TACCGCAGCG
AAAGGTGCGG TGAGTGCGTT GACGCGCTCG ATGGCCGTCG AATACGCGTC GCACAAGATC
CGTGTGAACG CGATTGCGCC AGGCATTACG CGTACGCCAC GCGTCGAGCG CTTGCTCGCT
GAAGATGGGG TGACTGCGCG GCTCTCGGAG AATTACCTGC TTGGCATTCT CGAACCGATT
GATATCGCGC AGATGGCACT TTATCTCGCA TCAGACGAGT CGCGGTTGAC GACTGGACAG
ATCCTCTCGG TAGACAGCGG CGCATCGATC GTCTGA
|
|---|
| Protein sequence | MNRLANKIAF IAGGAGGIGA AAAHLFAREG CQVAIGDRDF DEARRTVEAI KQEGGRAAAF
PLDVTQEDSV RAAIGDAVEA FGGLDVLYNN VGGSSTKDAS VTEAPLEEFW RCINVDLFGT
WLGCRHGIPE LIKRGGGSVI NTSSILALMG SPNKDAYTAA KGAVSALTRS MAVEYASHKI
RVNAIAPGIT RTPRVERLLA EDGVTARLSE NYLLGILEPI DIAQMALYLA SDESRLTTGQ
ILSVDSGASI V
|
|---|
| |