| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6407 |
|---|
| Symbol | |
|---|
| ID | 6278639 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2672337 |
|---|
| End bp | 2673479 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642617449 |
|---|
| Product | Extracellular ligand-binding receptor |
|---|
| Protein accession | YP_001890092 |
|---|
| Protein GI | 187921060 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 67 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAGTT ATATGAAACA TGGTTTCGCA GTTGCGGCGT TGTCTGCTGC ATGCAATGCT
GCGTTTGCCG CGGACGATAT CACCGTCATC AAAATTGGCA GTGCGGCGCC GACCACCGGC
GCGATTGCGA ATCTCGGCAA GGAAAACGAG AACGGTGCCC GCCTGGCGGT GGAGGATGTG
AATCGCCGCG GCCTGGTCAT CAATGGAAAG AAGATCAAAC TTGAACTCGA TGCCGTTGAT
GACCAGGCAG ATCCGCGTCA AGGTACACAG GTCGCACAGC GCCTTGTCGA CGATGGTGTC
GTAGCGGTGG TAGGCCATTT GAATTCCGGC GTATCGATTG CTGCATCGCG TATCTACCAC
GACGCACAGA TTTTGCAGAT CTCGCCCGAT TCCACTAATC CAAAGTTCAC GCAGCAGGGT
TTCAACACGA CCTACCGTCT GGTTGCAACG GACGCGCAGC AAAGTCCTGT TCTCGCGCAC
TATGCGCTGG AAACGCTGAA GGCAAAGAAG GTGGCTATCG TCGACGACAG CACGGCATAC
GGCCAGGGTC TCGCGGACCA GTTTTCCAGC GCTGTGAAAT CGGGTGGTGC AACGGTCGTA
GCACGCGAGG CGACAAACGA TAAAACCATC GACTTCAAAG GCGTTATAAC GAAAATCAAA
GGCCAATCGC CTGATGTCAT CTTTTACGGC GGCATGGATG CGACAGCGGG TCCATTCATC
AAACAGGTTG CGCAACTCGG CCTGAATGCC AAGGTGCTCG GCGGAGATGG CACATGTTCC
GATGAAGTCA TCGCACTTGC GGGTCCCGCG GTCGACCGTC TCGTCTGCAG TATTGCGGGT
CTGCCGCTTT CGCGGATGAA GGCCGGTCCG GCCTTTGAGA AGGAATATCA GCAACGTTTT
GGCATGCCGG TCCAGATCTA CGCGCCGTAT GCATACGATG CAGTGATGGT TATCGTCGAC
GCGATGAAAA AGAGTGGTAG CACAGACCAC GCAAAAATTC TCGCTGCTGC GAGCGCGACT
GATTATCAAG GTCTCACCGG TCAAATTCAA TTTGACGACA AAGGTGACGT CAGGAGCCCC
CGTCTGACGT TGTACGGCTA TAAAGATGGC AAAAAGACGT TGCTGACCAC CATGACGCCC
TGA
|
|---|
| Protein sequence | MNSYMKHGFA VAALSAACNA AFAADDITVI KIGSAAPTTG AIANLGKENE NGARLAVEDV
NRRGLVINGK KIKLELDAVD DQADPRQGTQ VAQRLVDDGV VAVVGHLNSG VSIAASRIYH
DAQILQISPD STNPKFTQQG FNTTYRLVAT DAQQSPVLAH YALETLKAKK VAIVDDSTAY
GQGLADQFSS AVKSGGATVV AREATNDKTI DFKGVITKIK GQSPDVIFYG GMDATAGPFI
KQVAQLGLNA KVLGGDGTCS DEVIALAGPA VDRLVCSIAG LPLSRMKAGP AFEKEYQQRF
GMPVQIYAPY AYDAVMVIVD AMKKSGSTDH AKILAAASAT DYQGLTGQIQ FDDKGDVRSP
RLTLYGYKDG KKTLLTTMTP
|
|---|
| |