| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6392 |
|---|
| Symbol | |
|---|
| ID | 6277549 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2654131 |
|---|
| End bp | 2655630 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642617436 |
|---|
| Product | glycolate oxidase subunit GlcD |
|---|
| Protein accession | YP_001890079 |
|---|
| Protein GI | 187921047 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 64 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTACC ACTACGACGA GCGCATCGAC GGCGCGCTCG CGACGCACGA CAAATCCACC
GTCGTCGCGC AGTTGCAGGC GTTGATTCCC GATCTGCAAC TGCTGCACGA ACAGGAAGAC
TTGCGGCCGT TCGAATGCGA CGGCCTCGCC GCCTATCGCG CCACGCCCAT GCTGGTGGCA
CTGCCCGATA AGGTCGAGCA GGTCGAAGCG TTGCTGAAAT TCGCCAATGC CCAAAAAATT
CCCGTAGTCG CGCGCGGCGC CGGCACGGGT TTATCCGGCG GCGCCCTGCC GCTCGATAAA
GGCATTCTGC TGGTAATGGC GCGCTTCAAC CGGATTCTCG AAGTCGATCC CGAGGCCGGT
ATCGCCCGCG TGCAACCAGG TGTGCGCAAT CTCGCGATTT CGCAGGCGGT GGCACCCCAT
GGCCTGTATT ACGCACCGGA CCCCTCGTCG CAGATCGCCT GTTCGATCGG TGGCAACGTC
GCGGAAAACG CCGGCGGCGT ACACTGCCTG AAGTACGGAC TGACCGTCAA CAACATCCTT
AAGCTCGAGA TTCTTACCAT CGACGGCGAG CGCATCACGC TCGGCTCAGA GGCGCTGGAC
GCGCCCGGTT TCGATTTCCT CGCGCTCTTT ACGGGCTCGG AGGGCATGCT CGGTATCGTC
ACCGAAGTCA CCGTGAAGCT GCTCACCAAG CCGCAAAGCG CGAAAGTGCT GCTCGCCAGT
TTCGACGACA TAGAAAAAGC CGGCGCCGCG GTCGCGCGGA TCATCGGCGC AGGCGTGATC
CCTGGCGGCC TCGAAATGAT GGACAACCTC GCGATCCGCG CTGCGGAAGA TTTCATTCAC
GCCGGCTATC CGGTCGATGC TGAAGCGATC CTGCTGTGCG AAGTCGACGG CGTGGAAAGC
GATGTTCAGG AAGACGTGGA GCGAGTCGAA GCACTGCTGA GCGCGGCGGG CGCGACCGAT
ATCCGGCTTG CGAAAGACGA AGCCGAACGC CAGCGCTTCT GGGCCGGCCG CAAGAACGCA
TTCCCGGCCG TGGGTCGCAT TTCTCCCGAT TACTACTGCA TGGACGGCAC GATTCCGCGC
CGCGAATTGC CGCGCGTGCT CAAAGGTATC GAGGACCTGT CGAACGAATA TGGCTTGCGT
GTGGCCAACG TCTTTCATGC CGGCGACGGC AACATGCATC CGCTGATCTT GTTCGATGCG
AACGCACCCG GCGAAACCGA ACGCGCGGAA ATGCTCGGCG CGAAGATCCT CGAACTGTGT
GTGGCGGTGG GCGGCAGTAT CACCGGCGAA CACGGCGTGG GCCGCGAAAA GATCAACCAG
ATGTGCGCGC AGTTCAACCA CGACGAACTG GATTTCTTCC ACGCACTGAA AGCCGCTTTC
GATCCGGCCG GCCTCCTGAA CCCCGGCAAG AACGTGCCAA CCCTGCACCG TTGCGCCGAA
TTCGGCTCGA TGCATGTCCA CCACGGCGCA CTGCCTTTTC CTGAACTGGA GCGTTTCTGA
|
|---|
| Protein sequence | MSYHYDERID GALATHDKST VVAQLQALIP DLQLLHEQED LRPFECDGLA AYRATPMLVA
LPDKVEQVEA LLKFANAQKI PVVARGAGTG LSGGALPLDK GILLVMARFN RILEVDPEAG
IARVQPGVRN LAISQAVAPH GLYYAPDPSS QIACSIGGNV AENAGGVHCL KYGLTVNNIL
KLEILTIDGE RITLGSEALD APGFDFLALF TGSEGMLGIV TEVTVKLLTK PQSAKVLLAS
FDDIEKAGAA VARIIGAGVI PGGLEMMDNL AIRAAEDFIH AGYPVDAEAI LLCEVDGVES
DVQEDVERVE ALLSAAGATD IRLAKDEAER QRFWAGRKNA FPAVGRISPD YYCMDGTIPR
RELPRVLKGI EDLSNEYGLR VANVFHAGDG NMHPLILFDA NAPGETERAE MLGAKILELC
VAVGGSITGE HGVGREKINQ MCAQFNHDEL DFFHALKAAF DPAGLLNPGK NVPTLHRCAE
FGSMHVHHGA LPFPELERF
|
|---|
| |