| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6385 |
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| Symbol | |
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| ID | 6278647 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 2645615 |
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| End bp | 2647447 |
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| Gene Length | 1833 bp |
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| Protein Length | 610 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642617429 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_001890072 |
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| Protein GI | 187921040 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 60 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCAAA CCGTAGGTGA CTTTATTATC GGGCGGCTTC ACGCATGGGG CGTACGTCGC
ATTTATGGAT ATCCCGGCGA CGGGATCAAC GGTGTTTTTG GCGCACTCAA CCGCGCTCAG
TCCGAAGCCA GAAATTCAAA ATCCGGCAAC CCGACGCAGC CCATCGAGTT CGTGCAGGTC
CGGCACGAAG AAATGGCGGC CTTCATGGCG TCTGCCCATG CAAAATTCAC CGGCGAACTC
GGCGTATGCA TTGCCACTTC GGGCCCCGGC GCTTCGCATC TGATCACCGG CCTCTATGAT
GCGAGAATGG ATCACATGCC CGTGCTCGCC ATCGCGGGTC AGCAGGCACG AGCGGCCCTG
GGTGGCCACT ACCAGCAGGA ACTCGACCTC GCTTCGATGT TCAAAGACGT TGCCGGCGCC
TTCGTCGAAC AGGCTTCGGT GCCCGCGCAG GTGCGCCATC TCGTTGACCG TGCTGTCCGC
ACGGCGCTAG CCGAGCGTAA GGTCACGGCA CTCATCCTCC CAAACGATCT GCAGGATCTG
CGCTATGAAG CGCCGGACCG CAAGCACGGT ACGTTACATT CCGGCGTCGG CTATCGCGCG
CCGCGTCTCG TACCCTATCC CGACGACCTG CAGCAGGCCG CCGAGGTGCT CAACGCTGGC
AAGAAAGTCG CGATCCTCGT CGGAGCCGGT GCACTACACG CAACAGATGA AGTCATCGCC
ATCGCCGAAA AACTCGGCGC GGGCGTTGCC AAGGCACTCC TCGGCAAGGC CGCGTTGCCA
GACGACCTGC CATGGGTCAC CGGCGCCATT GGTCTACTGG GCACCAAGCC AAGCTATGAC
CTCATGATGG AATGCGACAC CCTGCTGATG ATCGGTTCCG GCTTCCCTTA CTCGGAATTT
TTGCCGAAGG AAGGCGCCGC ACGAGGCGTG CAGATCGACT TGAAGGCCGA CATGCTGAGT
CTGCGCTATC CAATGGAAGT CAATCTCGTT GGCGATAGTG TCGAGACATT GCGTGCATTG
CTGCCGCTGC TCGAAGATAA GAAGGATCGT GCATGGCGCG GGAAGATTGA AGGCTGGACG
AAGGACTGGT GGAAGACGCT CGACAAGCGC GCCCATGAGG CCGGCAAGGA CGCAGTCAAT
CCGCAGCGCA CCGTGTGGGA ATTGTCGAAG CGCATTCCCG CCGACTCGAT CGTAACGAGC
GATTCGGGCT CCTGTGCGAA CTGGTACGCA CGCGATCTGA AGGTTCAGCG CGGCATGATG
TGTTCGCTCT CGGATGGCCT CGCATCGATG GGTGCAGCGG TCCCCTATGC GATCGCAGCC
AAGTTTGCCT TTCCCGAGCG TCCCGTCATC GCGCTGGTCG GCGACGGTGC CATGCAGATG
AACAACATGG CTGAACTGAT CACCGTTTCG AAGTACTGGA AAGACTGGGC CAATCCGCGC
TGGATCTGCA TGGTGCTGAA CAACTCCGAC CTCAATCAGG TGACATGGGA GCAGCGCGCC
GTGGAAGGCG ATCCCAAGTT CGAAGCGTCG CAGGATATCC CGTCCGTGCC GTATCACAAG
TTCGCGGAAC TGATTGGCCT CAAAGGTATT TACGTCGACA ACGATGAACA GATGGGCGCC
GCGTGGGACG AAGCGCTGGC CGCGGATCGT CCGGTCGTCA TCGAAGTGAA GTCCGATCCG
AACATCGCAC CATTGCCGCC GCATATCACG CTCGCGCAGG CCAAGGCGTT TGCGTCGACG
TTAATGAAGG GTGATCCGAA CGAAGGCAAC GTGATCGTCG AAACGGCCAA ACAGGTGCTC
GGCGCAGTCC TCCCCGGTCA TCACGACAAG TAA
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| Protein sequence | MAQTVGDFII GRLHAWGVRR IYGYPGDGIN GVFGALNRAQ SEARNSKSGN PTQPIEFVQV
RHEEMAAFMA SAHAKFTGEL GVCIATSGPG ASHLITGLYD ARMDHMPVLA IAGQQARAAL
GGHYQQELDL ASMFKDVAGA FVEQASVPAQ VRHLVDRAVR TALAERKVTA LILPNDLQDL
RYEAPDRKHG TLHSGVGYRA PRLVPYPDDL QQAAEVLNAG KKVAILVGAG ALHATDEVIA
IAEKLGAGVA KALLGKAALP DDLPWVTGAI GLLGTKPSYD LMMECDTLLM IGSGFPYSEF
LPKEGAARGV QIDLKADMLS LRYPMEVNLV GDSVETLRAL LPLLEDKKDR AWRGKIEGWT
KDWWKTLDKR AHEAGKDAVN PQRTVWELSK RIPADSIVTS DSGSCANWYA RDLKVQRGMM
CSLSDGLASM GAAVPYAIAA KFAFPERPVI ALVGDGAMQM NNMAELITVS KYWKDWANPR
WICMVLNNSD LNQVTWEQRA VEGDPKFEAS QDIPSVPYHK FAELIGLKGI YVDNDEQMGA
AWDEALAADR PVVIEVKSDP NIAPLPPHIT LAQAKAFAST LMKGDPNEGN VIVETAKQVL
GAVLPGHHDK
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