| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6213 |
|---|
| Symbol | |
|---|
| ID | 6277665 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2464699 |
|---|
| End bp | 2465451 |
|---|
| Gene Length | 753 bp |
|---|
| Protein Length | 250 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 642617268 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001889911 |
|---|
| Protein GI | 187920879 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.681142 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGGAG AAGTTAGCGG CGTCGCGGTC GTCACCGGAG CGGCGCGCAA TATCGGCCGC
GAGATCGCGT TGCAACTTGC GGCAGCGGGC AATGCAGTGC TCGTCAACGC ACGCAGTTCC
GCCGACGAAG CCGCCGAAGT CGTGCGCGCG ATCGAGGCTG CGGGCGGCCG CGCGGCCGCG
CATCTGGCCG ACGTCAGCGA ACCGGCGGGC GCGCAAAGTC TCATGGAAGC GGCGATTCAC
CATTTCGGGC AGATCGACAT TCTCGTCAAC AACGCCGCGG TGCGTCGCGA AGTGCCGTTC
GCGGAACTGG ATTACGCGCG CTGGCGCGAA GTGATGTCGG TGATTCTCGA CGGCGCGTAT
CTGTGCGCGC ACGCGGCCTT GCCGTATCTG CGGCAATCGA AGGCCGGCGC GATCGTCAAC
ATCGGCGGCA TGTCCGCGCA TGCCGGTTCG GCGGGGCGCG CGCACGTGAT CGCCGCGAAA
GCGGGCCTCG TCGGTTTGAC GCGCGCGCTG GCCCACGATC TCGGCCCGGA CGGCATTACG
GTCAATTGCG TGGTGCCCGG CCTGATCGCG ACGGTGCGCG GTGGCGCGGC AGGCAACAAG
GAACCCGCGC ATCACGCTGA GCGCACCACC TTGCTCGGCC GGCGCGGCCA GCCCGACGAG
GTCGCGAGCC TCGTGCAGTT TCTGTGCGGC CCGACGGCAC GGTATCTGAC GGGCCAGGCG
ATTCATGCGA ACGGCGGCGC GTTTCTAGGC TGA
|
|---|
| Protein sequence | MNGEVSGVAV VTGAARNIGR EIALQLAAAG NAVLVNARSS ADEAAEVVRA IEAAGGRAAA
HLADVSEPAG AQSLMEAAIH HFGQIDILVN NAAVRREVPF AELDYARWRE VMSVILDGAY
LCAHAALPYL RQSKAGAIVN IGGMSAHAGS AGRAHVIAAK AGLVGLTRAL AHDLGPDGIT
VNCVVPGLIA TVRGGAAGNK EPAHHAERTT LLGRRGQPDE VASLVQFLCG PTARYLTGQA
IHANGGAFLG
|
|---|
| |