| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6142 |
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| Symbol | |
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| ID | 6280344 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 2389516 |
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| End bp | 2391375 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642617199 |
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| Product | TRAP C4-dicarboxylate transport system permease DctM subunit |
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| Protein accession | YP_001889842 |
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| Protein GI | 187920810 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 53 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTCGA TCTCTTATTC ACACGAGCGG CAGCACCGCT TCGCCTGTGC GCTCGATTCA
GCGCTCGGGC ATCTGGTGGA GATTCCCGCT GCCTTGCTCG TGCTGGCGGA AATCGTCGTG
CTGCTGGCCG GCGTGACGAG CCGCTATATC CTGCACGCAC CGCTCGTCTG GTCCGACGAA
CTGGCCTCCA TGCTGTTCCT CTGGCTCGCC ATGCTCGGCG CCGTGATTGC CTTGCGGCGC
GGCGAGCATA TGCGAATGAC CGCGCTGGTC GGCATGACAC CGCCGGGCGT GCGCGCGTTT
CTCGACGTCG TGGCGATCGC CGCGCCGATC GCGTTTCTCG CGATGGTGAT CGGGCCGGCC
ATCAGCTTCG CGCAAGACGA GTCGTTCATC ACCACGCCCG CGCTCGAACT GTCGAATTCG
TGGCGCGCCG CCGCGTTGCC GATCGGTTCC GCGCTGATGC TGCTGGTCGC CGTGGTGCGC
CTTGCGCGCA TGGGCAACTG GCGCCTCGTG CTGGGCGCTG TCGCGACGGT CGGCGCGCTG
GTCGGCATCT TCATCGCGCT CGGCCCGCTG TTGCGCGACC TCGGCAATCT CAACCTGCTG
ATCTTCTTCG TTGGCCTCGT GGCGCTCGGC GTGCTGAGCG GCGTGCCTAT CGCGTTCTCG
TTCGGCCTCG CCACCTTCGG TTATCTCGCG CTGACCACGA ACACGCCGAT GCCGGTGGTG
GTCGGCCGGA TGGACGAAGG CATGTCGCAT CTGATCCTGC TGTCCGTGCC GCTCTTCGTG
TTCCTCGGCC AGTTGATCGA GATGACCGGC ATGGCCGCGG CGATGATCGC GTTTCTCGCG
AGCCTGCTGG GTCACGTGCG CGGCGGTCTT TCGTACGTGC TGGTCGGCGC GATGTATCTC
GTCTCCGGTA TCTCGGGATC GAAAGCCGCC GACATGGCCG CGGTCGCACC CGTGCTGTTT
CCGGAGATGA AAGCGCGCGG CGCGAAACCC GGCGACCTGG TCGCGCTGCT CGCCGCGACC
GGCGCGCAGA CCGAGACGAT TCCGCCGAGC CTCGTGCTGA TCACGCTCGG CTCCGTGACC
GGCGTGTCGA TCTCCGCGCT CTTCACCGGC GGCATGCTGC CGGGCATCGT ACTGGCGATC
ACGCTGTGCA TCGTCGTGCA ATGGCGTTAC CGGCGTGAAG ACATGTCGAG CGTCAAGCGC
GCGACGCGCG GCGAGATTCT GCGCAAGCTG GTGATCGCGT TTCCGGCGCT CGCGCTGCCG
TTCGTGATTC GCGCGGCGGT GGTCGAAGGC ATCGCGACGG CGACCGAAGT CTCGACCATC
GGCATCGCCT ACGCGGTGCT GGCCGGCTTG CTGATCTATC GCCGCTTCGA GTGGAAACGG
CTCAAGCCGA TGCTGATCGA TACCGCCACG CTCTCGGGCG CGATTCTGCT GATCATCGGC
GCGGCCACCG CAATGGCTTG GGCGCTGACG CAATCGGGCT TCTCGGGCCA GCTCGCACAG
ACCTTGGGCG CTTTGCCGGG CGGCGCGGCG ATGTTCATGG CGGCGTCGAT CTGCATGTTC
GTGATTCTCG GCAGCGTACT CGAAGGCATT CCGGCCATCG TGCTGTTCGG CCCGCTGATG
TTTCCGATCG CGCGGGCCAT GCATATCCAC GACGTGCATT ACGCCATGGT CGTGATCCTC
TCGATGGGCG TGGGCCTGTT CGCACCGCCG TTCGGCGTGG GCTACTACTC CGCTTGCGCG
GTGAGCCGCA TCCATCCGGA CGAAGGCATG AAGCCGATTC TCGGCTACAT CGCCGCGTTG
ATGGCCGGGC TGATCATCGT GGCCGCAGTG CCGTGGATTT CGACGGGCTT CCTGCATTGA
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| Protein sequence | MISISYSHER QHRFACALDS ALGHLVEIPA ALLVLAEIVV LLAGVTSRYI LHAPLVWSDE
LASMLFLWLA MLGAVIALRR GEHMRMTALV GMTPPGVRAF LDVVAIAAPI AFLAMVIGPA
ISFAQDESFI TTPALELSNS WRAAALPIGS ALMLLVAVVR LARMGNWRLV LGAVATVGAL
VGIFIALGPL LRDLGNLNLL IFFVGLVALG VLSGVPIAFS FGLATFGYLA LTTNTPMPVV
VGRMDEGMSH LILLSVPLFV FLGQLIEMTG MAAAMIAFLA SLLGHVRGGL SYVLVGAMYL
VSGISGSKAA DMAAVAPVLF PEMKARGAKP GDLVALLAAT GAQTETIPPS LVLITLGSVT
GVSISALFTG GMLPGIVLAI TLCIVVQWRY RREDMSSVKR ATRGEILRKL VIAFPALALP
FVIRAAVVEG IATATEVSTI GIAYAVLAGL LIYRRFEWKR LKPMLIDTAT LSGAILLIIG
AATAMAWALT QSGFSGQLAQ TLGALPGGAA MFMAASICMF VILGSVLEGI PAIVLFGPLM
FPIARAMHIH DVHYAMVVIL SMGVGLFAPP FGVGYYSACA VSRIHPDEGM KPILGYIAAL
MAGLIIVAAV PWISTGFLH
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