| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6141 |
|---|
| Symbol | |
|---|
| ID | 6279041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2388468 |
|---|
| End bp | 2389511 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642617198 |
|---|
| Product | TRAP dicarboxylate transporter, DctP subunit |
|---|
| Protein accession | YP_001889841 |
|---|
| Protein GI | 187920809 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
|---|
| TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 0.708346 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 55 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTACCC GTTCGAACGC CCCGCAGGGC ATCAGCCGCC GCAGCTTTCT GAAGGCCGGT
GCGACCCTGT CCGCAGCCGT GCCGTTATGG AGCGTCTCGC GGCGCGCCAT GGCGGCGCCC
GAGTTCTCGT ACAAGCTCGC CACCGGCCAA GACCCGACGC ATCCGGTCAA TATCCGCGCG
CAGGAGGCGA TCAATCACAT TCGCGAAGCG ACCAACGGCC GCCTCGACAT CAAGCTGTTT
CCGCAGAATC AGCTCGGCTC CGACACCGAC CTGCTCTCGC AGGTGCGCAA CGGCGGCGTG
GAGTTCTTCA ACCAGGCCTC GTCGATTCTC GCGACGCTCA CGCCGGCCGC GGGCATCGTC
AACACCGGCT TCGCGTTCAA GGACTACGAC GCCGTGTGGA AAGCCATGGA CGGCGACCTC
GGCAATTACA TTCGCGGTCA GATCGGCAAG TCCGGGCTCG TGTCGGTCAG CAAGGTGTGG
GACAACGGCT TCCGGCAGAT CAGTTCGTCC ACGCGCGCGC TGCGTGCGCC GGCCGACCTG
AAGGGCTTCA AGATCCGCGT GCCGCAAGCG CCGATGCTGA CCTCGCTGTT CAAGGCACTC
GACGCGGGCC CCGCGCCGAT CAACTTCAAC GAACTGTATT CGGCCTTGCA GACCGGCGTG
GTGGAAGGCC AGGAAAATCC GCTGCCGATC ATCGCCACGG CCAAGCTCTA TGAAGTGCAG
AAGTACATCA GCCTCACTTC GCACGTGTGG GACGGTTACT GGATTCTCGG CAACCGCGCC
GCGTGGGAGC GACTGCCGGC GGAAATGCGC ACCATTGTCA CGCGCGAATT CGAAAAGGCC
GCGATGCTGC AGCGCGCGGA CATCGCGAAG CTGAGCGGTT CCCTGCGCGA CGATCTGAAG
GCCAAGGGCA TTACTTTCAT CGACGTGGAT CGTGAGTCGT TCCGCGCCGC ACTGGCCAAG
ACGAGCTTCT ACCACGACTG GAAGAGCAAA TACGGCGACG AAGCCTGGGG TCTCTTGGAG
AAGTCCGTCG GAAAACTGGG GTGA
|
|---|
| Protein sequence | MTTRSNAPQG ISRRSFLKAG ATLSAAVPLW SVSRRAMAAP EFSYKLATGQ DPTHPVNIRA
QEAINHIREA TNGRLDIKLF PQNQLGSDTD LLSQVRNGGV EFFNQASSIL ATLTPAAGIV
NTGFAFKDYD AVWKAMDGDL GNYIRGQIGK SGLVSVSKVW DNGFRQISSS TRALRAPADL
KGFKIRVPQA PMLTSLFKAL DAGPAPINFN ELYSALQTGV VEGQENPLPI IATAKLYEVQ
KYISLTSHVW DGYWILGNRA AWERLPAEMR TIVTREFEKA AMLQRADIAK LSGSLRDDLK
AKGITFIDVD RESFRAALAK TSFYHDWKSK YGDEAWGLLE KSVGKLG
|
|---|
| |