| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6123 |
|---|
| Symbol | |
|---|
| ID | 6278178 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2363981 |
|---|
| End bp | 2367013 |
|---|
| Gene Length | 3033 bp |
|---|
| Protein Length | 1010 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642617180 |
|---|
| Product | transcriptional regulator, winged helix family |
|---|
| Protein accession | YP_001889823 |
|---|
| Protein GI | 187920791 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3903] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCGCA TTGGCCCGCT TCAGGTGGAC CTCGCCAGCC GGGAACTGTT TCTCGACGGG
CAGCCCGCGC GCATCGGCAG CCGTGCATTT GACATCCTGG CCGTGCTGAT CGGCGCGAAC
GGGGCGCTGG TGTCGAAGAG CGCCATGCTC GAACAGGTCT GGCCGGACAC CATCGTTGAA
GAGAACAATC TTCAGGTGCA TATGTCCGCC TTGCGCAAGG TGCTGGGCGA GAGCCGCAAT
CTGATACAGA CCGTGTCGGG AAGAGGCTAC CGTCTGGCGT CCCGGGACGC ACCCGAGGAA
CAGACGGGCA AGCCCGCTCG CGATGGCGCG CCCGATGCCG CCGAAGACAG CGCGTGCCTG
CGCGGCATCC CCAACAATCT GCCCGCTAGT AGCTCGTCGC TGATCGGCCG CGATCAGGCG
GTCAGCGACA TTGCGCGAGC GCTCGCTTCG ACGCGTCATG TCACGCTCGT CGGTTCGGGC
GGCATCGGCA AGACCCGCAT GGCGATCGAG ATCGCACGCA GCTTATTGGC GCACTTTCCG
GAAGGTGTCT ATCTCGTGCC GCTTGCGTGC ACCGTGGACG CAAACAGCGT GCTCGCCATG
TTCGCCCATA GCGTCGGCGT GAGCGCCGCG AGCGGCCCGC TTACGCTCGC GCACATCAGC
AAGGAACTCA GCGAGCGGCG CGTGCTGTTC GTGCTGGACA ACTGCGAGCA CGTACTCGGT
CCCGCCGCCG AACTGGCCGA AGCGCTCCTG AACGCGAGTC CGGCCACGCG GATTCTCGCG
ACCAGCCGCG AGCCTCTGCG TGTCGTGGAC GAACATTTGT ACTGGGTGGC GTCGCTCGAT
GTGCCCGCTC GCGACGATGA GAGCGAGCAG GTCTTGCAAC GCAGTGCCGT CCAGTTGTTC
CTGTCACGCG CCCGCGCGAT CGACGCGCGC TTTTCGTCCG ACGACAGAAG CATTCATTTG
ACCGGCACCG TATGCCGCCG CCTCGACGGC ATTCCGCTGG CGATCGAACT GGCGGCGGCG
CGTGCCGCGA TACTCGGCAT CGAGACGCTC GCGGATCATC TCGACGACCG TTTCAACATG
CTGACGGGCG GCAATCGCAC TGCATTGCCG CGCCACCAGA CCTTGAAGGC GACGCTCGAC
TGGAGCCACG CGTTGCTCGA CGACGCAGAG CGCACGACGC TGCGGCGGCT CGGTATTTTC
GTCAATAGTT TCACGATCGA CTCGGCGATC GCTCTGGTGA GCGATGAAGG CTTGCGCGAG
TCGGACGTGA TCGCGGCGCT GTCCGGACTC GTCGAAAAAT CGCTAGTGGT GATGCAGGCC
GAGCGCGGCA AGGCGAGTTA TCGGCTGCTG GAAACCACGC GTGCCTACGC GATGCAAAAG
CTCGACGACA ACGGCGAGCG GCGTGCTGTC ACGCTCACTC ACGCGCGCTA TTTTGCCAAT
CTGCTCGAAC GCGATCCGTC GAGCGACGCC TCCTACGCGG CACGCGAAGC GAACGCCGCG
GGCGCCGAAC GGCACGGCTG GCATCACCGC ATGCGCGAGC AACTCGACGA TTTGCGAGCC
GCGCTGGGCT GGGCGCTATC GCACAAAGGC GACGCCGCGC TCGGTGAAAC GCTGGCGGTG
AAGTTCGTGT CGCTGCTGTA TGAGCTTTCG CTGGTCGACG AATGCTGCGT CTGGGCACGG
CGCGCGCTCG ACGCCATGAA CGCGATATAT CAAGGCTCGC GCTCGCCGCG CCATTTGCGC
GTGCGCATGC AACTGCTGGC CGCGCTCGCT GCGGCGCTCG TCTACATCAA CGGACCGAAC
CGGGAAGCGC TCGGCGTCTG GGCGGAGGTG CTCGCGATCG CGATCGCGCT CGGCGATCAG
ACGTTCGAAG CACGCGCGTT ATGGGGCATG TGGAACGCGA GCCAGTCGTC CGGTGAGGCG
CGCAACGCGC TGGCGTTCGC GCAGCGCTTC GCGTCGCTCG CCGCGGAGAC GGGCGATGCC
GCCAACGGGA TTCTCGCTGA TCGCCTGCTC GGCATTGCCG CACATTACGC GGGCGATCAG
CACCAGGCGC GCGCCTCGCT CGATCGGTTT CTGCAGCACG CCGGCCGCCT GCAACATCGG
CTGCCGCTGG GGCAATCCAT CGACCAGGGC GTGGTCGGCC GTGCGACCTT CGCTCGCGTG
CTCGGCCTGG CAGGCGAGCG CGATCAGGCG TTGAGCATCG CCGAGGCATG CGTTGCGCAA
GCGTGCCGGC AGGATCAGGC TATCGTCACG TGCTACGTGC TGGTCGAGGC GGAAATTCCG
CTGGCGCTGC TGGCGGGCCA GCGCAAGCGG GCGGCTCGGG CCATCGCGCT ATTGCGCGAC
GTGTCGGCGC GTGGCGGGCT GAGGGTGGCG CATGCGTGCT GCCGCTGTTT CGACGAATAC
CTGCATTCGC TGGATGACAC CAGCGCGCAG CGTGTGCACA GCTTTCGCGC CGCGCTGGAC
GATCTCGACG CGCTCGACTA CGCCGCGCCA CGCGCCATGC TCGCCGCGCA ATACGCTCTT
GCGCTCGGCC GCGCCGAACA GCGCGAGGAG GGCGTTGCCG TCGTGCTCGA TGCGCTCGCG
CGGAGCGACG AAACCGGCGA TCAGTGGTAT GCCGCCGAAC TCAGACGCGT GCACGCCGAA
TTGCTGCTGA TGGAGTACGG CTCTGGCCAA TCACCGTTCG GCGATGCGGC AACACACGCA
CAGGCGGGTC TGATCGCGGC AGTGGAAGAA TCGTCGGCAC AGGATTGCTG CACGTTGCAC
CTGCGAGCCG CGACCAGCCT TGCGCGGCTT TGGCACGCGC AAGGCCGAAG CGCCGAGGCG
GTGCAACTGC TTACGTCCGC CTGTGCCAGA CTCACGGAAG GCCGCGATTG GGACGACTTC
AAGGCGGCTA AAGAACTACT GCGCGTCGTA AACGAGGCCT GTACGCCGGC CGGTATTTCC
GCCGGCATCG ATCTGCGGAT GGAGACGAAT GCGGAAGCGA ATGCGGCGTC GTTCGACGGC
CCGCCGCCGG ACGAGATCAG CGAAGCCTGC TAG
|
|---|
| Protein sequence | MIRIGPLQVD LASRELFLDG QPARIGSRAF DILAVLIGAN GALVSKSAML EQVWPDTIVE
ENNLQVHMSA LRKVLGESRN LIQTVSGRGY RLASRDAPEE QTGKPARDGA PDAAEDSACL
RGIPNNLPAS SSSLIGRDQA VSDIARALAS TRHVTLVGSG GIGKTRMAIE IARSLLAHFP
EGVYLVPLAC TVDANSVLAM FAHSVGVSAA SGPLTLAHIS KELSERRVLF VLDNCEHVLG
PAAELAEALL NASPATRILA TSREPLRVVD EHLYWVASLD VPARDDESEQ VLQRSAVQLF
LSRARAIDAR FSSDDRSIHL TGTVCRRLDG IPLAIELAAA RAAILGIETL ADHLDDRFNM
LTGGNRTALP RHQTLKATLD WSHALLDDAE RTTLRRLGIF VNSFTIDSAI ALVSDEGLRE
SDVIAALSGL VEKSLVVMQA ERGKASYRLL ETTRAYAMQK LDDNGERRAV TLTHARYFAN
LLERDPSSDA SYAAREANAA GAERHGWHHR MREQLDDLRA ALGWALSHKG DAALGETLAV
KFVSLLYELS LVDECCVWAR RALDAMNAIY QGSRSPRHLR VRMQLLAALA AALVYINGPN
REALGVWAEV LAIAIALGDQ TFEARALWGM WNASQSSGEA RNALAFAQRF ASLAAETGDA
ANGILADRLL GIAAHYAGDQ HQARASLDRF LQHAGRLQHR LPLGQSIDQG VVGRATFARV
LGLAGERDQA LSIAEACVAQ ACRQDQAIVT CYVLVEAEIP LALLAGQRKR AARAIALLRD
VSARGGLRVA HACCRCFDEY LHSLDDTSAQ RVHSFRAALD DLDALDYAAP RAMLAAQYAL
ALGRAEQREE GVAVVLDALA RSDETGDQWY AAELRRVHAE LLLMEYGSGQ SPFGDAATHA
QAGLIAAVEE SSAQDCCTLH LRAATSLARL WHAQGRSAEA VQLLTSACAR LTEGRDWDDF
KAAKELLRVV NEACTPAGIS AGIDLRMETN AEANAASFDG PPPDEISEAC
|
|---|
| |