| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6106 |
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| Symbol | |
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| ID | 6279624 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 2344269 |
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| End bp | 2347127 |
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| Gene Length | 2859 bp |
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| Protein Length | 952 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 642617163 |
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| Product | type VI secretion system Vgr family protein |
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| Protein accession | YP_001889806 |
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| Protein GI | 187920774 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 0.894358 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 0.984753 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACCCAGT GGCTAACCCA GACACACACC GTCACGTTCA GCGGTGCCGC GCTTCCCGAA
ATCGTCGGCG TCTCATACAG GAACAGGCAG TTCACCGAAA AGCGCGCGCC GATGCTGACC
GTTCGCCGGG TCAGCGGACG CGAGGCGGTC GGCGAACTGT TCGAATATAT CGTCGAGACA
GCAGTCGAGA ACCCGGACTT TCTGGAAGAC CCAGAGAGCG CCGCGCAGAT CGATCTGGAG
CGCATCGTCG GCACAACAGG CACCGTTGCG ATCCAGATCA CCGGCATCGG CACCTTCCGC
GCGGGCGCGA CAGGCGATAC CGGGCGCGCG AATGTCGGCG CCGATACCCG CTACATCAGC
GGCGAAATCG TTTCGGCGCG GATCAGATGC GTTGAAGACC GCGCGTCGAT TTTCGAGTTC
GTGCTGCGTC CGTTTGTGTG GCGCGCAACG CTGAACTGCG ATTCGCGCAT CTTTCATGGT
CCGGTGACCA AGGTGCTCGA AGAAGTCCTG CAACCTTATG TGGGCACCGT TGAATGGCGT
ATCGGCGGAA TGTGGCCCGG CAAAGGCTAC CCGCCGCGCG ACATGATCCG GCAGGCGTGG
GAATCAGACT GGGCATTCAT ATCCCGTTTA ATGGAAGAGT TCGGGCTCTG CTACTGGTTC
GAGCATCGTG ACGACTTTCA TTCGCTCGTC ATTTCCGACC TGCTGAGCGG CTTCCGTCCG
CACGGCGTCG CCTATGAAAC ACTTCGCTAT CATCCGGCCG GCCGGATCGA TGAGGAACAT
ATCAGCGAAC TGTCGGTGTC GTACACGCTG ACGCCGGGCA GCGCCGAAGT CAACGACCAC
AACTACGCGG AGCCGCGACT TGCAAAAAGT CTCGCACCGA ACCGCGAACG CTACGAAGAC
CTGCGCGGCA CGGCGAGCCG GGCCATCGAA ATCTACGAAC CCGCCGACTT CGCGCAGCCC
GAGGCCCGGC GCACGTTTGC CGACGCGAAC GACGAGCGGG AGGAAGCCCG GTATCTTGCA
CGGGTCAAAC TCGAAGCGAG ACGCTGCCAG GGGCTGCGCG CAACCGGCAG GGGTCATATT
CAGGGGCTGC AGCCCGGCCG CACGTTCACG CTGACCGGCT ATCCGCAGCA GCGCGCGAAC
TGTGAATACA TCGTTCTGCG CTGCACGCTG GATATCACTG AAGTTGGCAC GTCCTCAGGT
GACTGGCGTC AGTACTCGGT CAACACGGAA TTTGAACTGC AACCGGCGAA CGAGTATTTC
CGGCTGCCGC AGATCACGCC GAGGCCGCGC GTGGACGGCT ATGAATACGC CGTGGTGGTC
GCGCCGCAGG ACAAGGAAAT GTACATCGAC TCGCGCAACC GGCTGCGCAT CCAGTTCGAC
TGGGACCGGC AGGCGAAGCT CGACGGCGCG ACCTCGATCT GGGTGCGCGT CATGACGCAA
TGGCAGGGCG GCGAGCTGGG TGTGGTTGCA CCCGGTCGCG CGGGTCAGAT GGTGCTGGTC
GCGCACGTGC ACGGTGACCC GGACCGGCCT GTCGTCGCCG GATTCGTGGT GGACAAGTTC
AACATGCCGC CGTGGGCACT GCCGGCCAAC GCGGCGCTTA GCGGCATGCG CAGTAAGAGT
CTTGGGTATG GTCTGCGCTC CAATCATCTC GCGCTGGACG ATACGCCCGG CAGGATGCAG
GCGCAACTGT CGAGCGACCA GGCTAATTCG CGGTTTGTGG CGGGGTTCAA TACGCGCATC
GAAGGCAACC GGGGGCGCAC CGAGCCGCGC GGCGAAGGGA TCGAGATTGC CACCGATGCG
CATGCGGTGA TGCGGGCGAA CCGGGGCTTG CTCGTAACGA CCGAGACGCG CGCGGGGGCG
ACCGCTCCCG TGAAGGATAT GGGCGAGACG GTACAGCGGC TCACGCAGGC GCGGCAACAG
CATGAAGACC TGTCACTGCT CGCGAAGCAG CACAACGCGC AGACGCCGCA AGCGAGCCAG
AGCGATGCGG CCAGCACGAT CAGGACACAG AACGGCGCGA TCAGGGGCGG CGCCAGGACG
CCGGAGAATC CATCGCCGGA GCTGACGCGC CCGGACGTGG TGATGGCGAG TGCGGCAGGC
ATCGCGACCA CGGCCGCAGA CAGCACGCAT ATGGCGAGCG CGAACGATCA CGCGGTGACG
GCGGGACGGG ACGTGAGTGT GTCGTCGGGA CGTTCGCTGT TTGCGTCGGT GCGCGGTGCG
ATCAGCCTGT TTGCCTCGCA GCTCGGCATG AAGCTGATTG CGGCGAAGGG GCGCGTGGAC
ATCCAGGCGC AAAGCGACCA GATGGCGTTG GCGGCGCTGA AGGACGTCAC GATCAGCAGC
ACGGACGGCA GGATCGTGAT CACCGCAGCA AAGGAAGTCT GGCTCGGTGC GGGCGGGTCG
TATATCCAGA TCAACGGCGA CGGGATCATC AATGGGTCGC CCGGGCCGAT TCTGGAGAAA
GGCGCGTCGT GGGACGTGCC GGGGCCGGAT TCGAAGCGTG TGTCATTACC CTTCCTTCCA
CTCAGCGCCT TACCGCAAGC AGCGGAGTAT GAATACTCGC AAATTTTCGA TATCAGCACG
CTTATTCCAG CCGTCAGTAT TGGTTCAGCT CTTGAGAGCC AGCCATATCG AATCTATCTT
GCAGACGGCA CGATCCAGCA GCAAGGCATG CTAACGGACG GCGCAACGGA GGTTGTCCAC
ACTCTTGCAT CCACCCAAGT CAAATGCGAG ATCGGTACGG GTGACTGGGG AGTTACTGAA
CATGCTTACG ACGACATCGA ATTGAACGCC GAGGAAGAAG CGCAATTTCG GTCGGGCGAC
AACTTTGAAA AGTTGGAGGG AAATGAAATA CATGAATAA
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| Protein sequence | MTQWLTQTHT VTFSGAALPE IVGVSYRNRQ FTEKRAPMLT VRRVSGREAV GELFEYIVET
AVENPDFLED PESAAQIDLE RIVGTTGTVA IQITGIGTFR AGATGDTGRA NVGADTRYIS
GEIVSARIRC VEDRASIFEF VLRPFVWRAT LNCDSRIFHG PVTKVLEEVL QPYVGTVEWR
IGGMWPGKGY PPRDMIRQAW ESDWAFISRL MEEFGLCYWF EHRDDFHSLV ISDLLSGFRP
HGVAYETLRY HPAGRIDEEH ISELSVSYTL TPGSAEVNDH NYAEPRLAKS LAPNRERYED
LRGTASRAIE IYEPADFAQP EARRTFADAN DEREEARYLA RVKLEARRCQ GLRATGRGHI
QGLQPGRTFT LTGYPQQRAN CEYIVLRCTL DITEVGTSSG DWRQYSVNTE FELQPANEYF
RLPQITPRPR VDGYEYAVVV APQDKEMYID SRNRLRIQFD WDRQAKLDGA TSIWVRVMTQ
WQGGELGVVA PGRAGQMVLV AHVHGDPDRP VVAGFVVDKF NMPPWALPAN AALSGMRSKS
LGYGLRSNHL ALDDTPGRMQ AQLSSDQANS RFVAGFNTRI EGNRGRTEPR GEGIEIATDA
HAVMRANRGL LVTTETRAGA TAPVKDMGET VQRLTQARQQ HEDLSLLAKQ HNAQTPQASQ
SDAASTIRTQ NGAIRGGART PENPSPELTR PDVVMASAAG IATTAADSTH MASANDHAVT
AGRDVSVSSG RSLFASVRGA ISLFASQLGM KLIAAKGRVD IQAQSDQMAL AALKDVTISS
TDGRIVITAA KEVWLGAGGS YIQINGDGII NGSPGPILEK GASWDVPGPD SKRVSLPFLP
LSALPQAAEY EYSQIFDIST LIPAVSIGSA LESQPYRIYL ADGTIQQQGM LTDGATEVVH
TLASTQVKCE IGTGDWGVTE HAYDDIELNA EEEAQFRSGD NFEKLEGNEI HE
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