| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_6003 |
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| Symbol | |
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| ID | 6279812 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 2234036 |
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| End bp | 2235151 |
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| Gene Length | 1116 bp |
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| Protein Length | 371 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 642617063 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_001889706 |
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| Protein GI | 187920674 |
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| COG category | [S] Function unknown
[T] Signal transduction mechanisms |
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| COG ID | [COG3159] Uncharacterized protein conserved in bacteria
[COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 0.753958 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 33 |
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| Fosmid unclonability p-value | 0.321238 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGAACC TCGCCCAAAC GCCGCTTTCC GAGCGCCTTC GTTCCCTCGT CGATACCGTG
CAGCACAACG AGCGCACGCT GCGGCGCTTC CAGAACGTCG AGTTGCGTCT GATCGGTGCT
CAGGACTTCG CATCGTTTCT CGACACGCTG TTCACTCAAT TGCCGCGGGA ATTTTCGCTG
ACGGGCGTGA CGCTCTGGCT CGACGATCGC GCGCCGATGC TGCGTGAACT GCTTGAGCCG
GCCGCCTTGC GCGCACTCGA TCAGTCGAAG CTGCTGGTCT CGCGAGAAGG CGGACTTGCC
GCGCAAGGCT TGTGCGACGA AGGGCGCCCT TGGCTCGGCA ATCTGCACGG CATGGGCGAT
TCGGCGCGGC GCGCATTCTT CGGCGCCGGC CTGACACCCG CGAGCGCAAT CGTGCTGCCG
CTTGCCGCGG GCGATACCGT GAGCGGCTAT CTCTGTCTCG GCAGCGACGA CCCGGCGCGT
TTCGCCGAGG GCATGGCCAC CGACATTCTC GAGCGCTTCG CGAGCATCGT GACAGCGAGT
CTCGACAACG TCGCGCATCG CGAGCGGCTC AAGCAACTGG GCATGACCGA TTCGTTGACG
GGCCTCGCCA ATCGCCGCTA TTTCGACGAG CGGATGCGCG AGGAGATCAT GCGCGCCTGT
CGCTACGGCG TGCCGGTGGC GTGTCTGTTC ATCGATATCG ACAGCTTCAA GCGGATCAAC
GACACCTACG GCCATCAGAC CGGCGACCGC GCGTTGGCGG CGGTGGCGGC TTGCGTGCGG
CAACAGGTGC GTCTCGGCGA TACCGTCGCG CGTTATGGCG GCGAAGAATT CGCGGCGTTG
CTGCAAGGCG ACCGGGCCGA CGCGCTGACC GTCGCCGAAC GTGTGCGGCT GGCGGTCGAA
CGGCTGGCTT TGCAGGACGA TCATGGCGAG CGCATCGTCC TGACGGTGTC GATTGGCGTG
GCGGCGCGCA CGATCAGCGG CACGCCGGCC GAGGCGGCCA AACTGGGCGG CGCGATGATG
GAAGAAGCCG ACCGCGCGAT GTATCAGGCC AAACGCAACG GCCGCAATCG CATCGAGGCG
CTGGTTAAAG CGGGCGATGT GGAAACGGCA CGTTGA
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| Protein sequence | MTNLAQTPLS ERLRSLVDTV QHNERTLRRF QNVELRLIGA QDFASFLDTL FTQLPREFSL
TGVTLWLDDR APMLRELLEP AALRALDQSK LLVSREGGLA AQGLCDEGRP WLGNLHGMGD
SARRAFFGAG LTPASAIVLP LAAGDTVSGY LCLGSDDPAR FAEGMATDIL ERFASIVTAS
LDNVAHRERL KQLGMTDSLT GLANRRYFDE RMREEIMRAC RYGVPVACLF IDIDSFKRIN
DTYGHQTGDR ALAAVAACVR QQVRLGDTVA RYGGEEFAAL LQGDRADALT VAERVRLAVE
RLALQDDHGE RIVLTVSIGV AARTISGTPA EAAKLGGAMM EEADRAMYQA KRNGRNRIEA
LVKAGDVETA R
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