| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5967 |
|---|
| Symbol | |
|---|
| ID | 6277465 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2195127 |
|---|
| End bp | 2196494 |
|---|
| Gene Length | 1368 bp |
|---|
| Protein Length | 455 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 642617029 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_001889672 |
|---|
| Protein GI | 187920640 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGCCG CCAACCGCCG CGCGATGGCC GCGATCATGC TCGCCGTCGC GCTCGCCACG
CTCGACACCG CCATCGCCAA TACCGCGCTG CCCGCCATCG CCGCCGACCT GCATGCGGCG
CCGGCGGCAT CGGTGTGGAT CATCAATGCG TATCAGCTCG CGATGGTCGC GACGCTACTG
CCGCTCGCCG CGCTCGGCGA TATCGTTGGG CATCGGCGGA TCTATATCGG CGGGATTGCG
CTCTTCACGC TGGCGTCGCT GGCGTGCTCG CTGGCCTCGA CGCTGCCGCT GCTGGCCGCC
GCGCGCGTGC TGCAAGGCCT CGGCGCGAGC GCGATCATGA GCGTGAATAC CGCGCTGATC
CGCTATCTGT ATCCGCCGCA CCGGCTCGGA CGCGGCCTCG GCACCAACGC GCTGATAGTC
GGTGTGTCGT TCGCGGTCGG ACCGACGGTG GCGTCGCTGA TTCTGTCGGT GGCCGCGTGG
CCGTGGCTGT TCGCGGTCAA TGTGCCGCTC GGTCTGCTGG CCTTGGGCTT CGCCTGGCCG
GCGTTGCCGT ACACCGAACG CGGCAAGCAC AACTTCGATC CGGTCGCGGC GCTCCTGAAC
GTCATCACCT TCGCCGCGTT GATCTTCGCA CTCGGCGAGG CGGCCCAGCG CGCGTCGACA
CAACTGGTAC TGAGCGCGGC GGCGATTGCG CTGGTCTTCG GTTTCCTGTT GATTCGGCGC
GAAGCGGGCC ATCCTGCGCC GATGCTGCCC GTCGATCTGT TCAAGCGGCC GGTGTTCGCG
TTGTCGGCGG TCACGGTCGT GTGCTCGTTC GCCGCGCAAG GGCTGGCGTT CGTCTCGCTG
CCGTTCTACT TCGAGGATGT ACTGCATCGC AGCCAGGTCG AGACCGGCTT TCTGATGACG
CCGTGGCCCG TGGTGGTCGC GCTGGCCGCG CCGCTGGCGG GCAGCTTGTC CGACCGCTAT
CCGCCCGGAC TGCTTGGCGC GATCGGTCTC GCGGTGATGT CGGCGGGAAT GGCTTCGCTG
GCGCTCCTGC CGGTGCATCC GCACGTGGTC GACATCGGCA TTCGCATGGC GGTTTGCGGC
GCGGGCTTCG GGTTTTTCCA GTCGCCGAAT CTGAAGGCGT TGATGGCAAG CGCGCCGCCG
GAGCGCAGCG GTGGCGCAAG CGGCATCGTC GCGACTGCGC GACTGCTTGG GCAAACCACC
GGCGCGGCGC TGGTCGCACT GAGTTTCGGG ATTGCGGGCC GGCATGGGCC GACGCTGGCG
CTGAGCACCG GCGCCTTCTT TGCGGGCGCG GCGAGCCTCG CGAGCGGGCT CAGGTTGCTG
GCGCCGTCGC ATCGGTCAGG CGTGCATGCG AAGGCATCGG TGAAATGA
|
|---|
| Protein sequence | MSAANRRAMA AIMLAVALAT LDTAIANTAL PAIAADLHAA PAASVWIINA YQLAMVATLL
PLAALGDIVG HRRIYIGGIA LFTLASLACS LASTLPLLAA ARVLQGLGAS AIMSVNTALI
RYLYPPHRLG RGLGTNALIV GVSFAVGPTV ASLILSVAAW PWLFAVNVPL GLLALGFAWP
ALPYTERGKH NFDPVAALLN VITFAALIFA LGEAAQRAST QLVLSAAAIA LVFGFLLIRR
EAGHPAPMLP VDLFKRPVFA LSAVTVVCSF AAQGLAFVSL PFYFEDVLHR SQVETGFLMT
PWPVVVALAA PLAGSLSDRY PPGLLGAIGL AVMSAGMASL ALLPVHPHVV DIGIRMAVCG
AGFGFFQSPN LKALMASAPP ERSGGASGIV ATARLLGQTT GAALVALSFG IAGRHGPTLA
LSTGAFFAGA ASLASGLRLL APSHRSGVHA KASVK
|
|---|
| |