| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5960 |
|---|
| Symbol | |
|---|
| ID | 6278619 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2183527 |
|---|
| End bp | 2186580 |
|---|
| Gene Length | 3054 bp |
|---|
| Protein Length | 1017 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642617022 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_001889665 |
|---|
| Protein GI | 187920633 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.618564 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTCA CCGATCTCTT TATCCGGCGG CCCGTGCTGG CCTCGGTGGT CAGTCTGCTG
ATCCTCGTGC TCGGATTGCG CTCGCTGGCC GCCCTGAAAG TTAGCCAGTA TCCGCAGACC
GAAAACGCCG TCGTGACGAT CACCACGGCC TATTACGGCG CGAATGCCGA CACCATTGCG
GGCTTCATCA CGCAGCCGCT GGAGGCGGCA ATTGCCCAGG CGCAAGGCAT CGACTACATG
TCGTCGACGA GCAGCACCGG CGTGTCGACC ATTATCGCCA CGCTGCGCCT GAACTACGAC
GCGAACCGCG CGCTGACCGA GATCAATACG CAGATTGGCT CGGTGCGCAA CCAGTTGCCG
CCGCAAGCGC AGCAGCCGGT GCTGACGGTA CAGACCGGGC AGACCACCGA CGCGATGTAC
ATGGGCTTTT ATAGCGACGT GCTGCCGAGC AACAACGTCA CGGATTACCT GTTGCGTGTG
GTCAAGCCCA AGCTCGATTC GATCGAAGGC GTGCAGATCG CCGAAATTCT CGGCGGGCGG
CAGTTCGCGC TGCGCGCGTG GCTCGATGCG ACACGGCTCG CCGCGCACGG CGTGACGGCG
GCGGACGTAT TCACAGCGCT CGGCAACAAC AACTATCTCG CGACGCTCGG CACGACCAAA
GGCCAAATGG TCAGTGTCGA CCTGAACGCG GGCACGGACC TTCATACCGT CGACGACTTC
AAGCAACTTG TCATCAAGCA GAAGAACGGC GCGATCGTGC GCCTCGAAGA CGTCGCCAAC
GTCGTACTCG GCGCCGACAG CTACGACTTC AACGTCGCGT TCAGCGGCAA GCGTTCGGTG
TTCATCGGTA TCAAGGTCGC GCCGGACGCC AATATTCTCG ATGTCGCCAA GCGTGTGAAG
GCCATCTTTC CCGGCCTGCA GAAGCAGTTT CCGACCGGCA TGACGGGCGA GATCGTGTAC
GACGCAACCG ATTTCGTCAA CACGGCGATC GTCGAAGTCA TCAAGACGCT GGTCGAAGCT
CTGCTGATCG TCACCGCGGT GATTTTCCTG TTCCTCGGCA GCTTCCGCGC GGTCGTCGTG
CCGCTGATCG CCATGCCGTT GTCGCTGATC GGCACGTTCT TCGTCATGCA GTTGCTCGGC
TATTCGATCA ATCTGCTGAC GCTGCTCGCG CTCGTGCTTG CAATCGGGCT CGTGGTGGAC
GACGCGATCA TCGTCGTGGA GAACGTGGAT CGCCACATGA AGGAGGAAGG CAAGGCGCCA
TTCGATGCCG CGCTGATCGC CGCGCGCGAG CTCGGCGGAC CGATTCTCGC GATGACCGTC
GTGCTGATCG CCGTGTATGC GCCGATCGGT TTTCAGGGCG GCCTGACGGG CGCCCTCTTC
ACCGAGTTCG CCTTCTCGCT GGCCGGCGCG GTGACCGTAT CCGGCGTGAT CGCGCTCACG
CTGTCGCCGA TGATGTGCTC GCGCTTTTTC CGCGCGGAAC AGGAGTCGGG GCGCTTCGCG
CGTTTCGTCG ACCGCCAGTT CGAACGCGTT CATCGCGGCT ATGGTCGTCT GCTGCACGCC
ACGCTCGACA CCTGGCCCGT GTTCATCGTG ATGGGCGCGC TGCTGCTCGC CGGCACGATC
TATCTGTTCA TGACGTCGAA ATCGGAACTC GCGCCCGAAG AAGATCAGGG AATCGTGCTG
TCGCAAATCC AGGGGCCGCC GAACGCGACC ATTCAGCAGA TGCAGACCTA CGCGGACCAG
GTCTTCAATA TCTCCAAGGC GCTGCCCGAA TATTCGCAGA TGTTCCAACT CACCGGCGCA
CCGACACTGA ACCAGGGGAT CGGCGGCGTG CTGTTCAAGA CATGGGATCA GCGCAGCAAA
GGCGCGGGCG CGTTGCAGCA GGAATTGCAG CAGAAATGGA ATCAGATTGC CGGCGCGCGC
GTCGCGGCGT TTCAGTTTCC ACCGCTGCCG GGCTCGCAGG GCTTGCCGGT GCAGTTCGTG
ATCAGCACGA CCGAGCCGTT CGAGAACCTC AACGAGGTCT CGCAGGCAGT TCTGCAACAA
GCCCGCGCGA GCGGGATGTT TTTCTTCGTC GACAGCGATC TCAAGCTCGA CAAGCCGGAA
GCCACGCTCG TTGTCGACCG CGACAAGGTC GCTTCGCTCG GGCTCTCGCA GAGCGACGTC
GGGCAGGCGC TCGGGTCCGC GCTCGGCGGC GGCTATGTCA ACTACTTCTC GATCGCCGGG
CGCTCTTACA AGGTGATTCC GCAGGTGTTG CAGACCGACC GTCTGAATCC TTCGCAGGTG
CTCGATTATT ATTTGCGCAC GCCGGACGGC AGCGTCATTC CGGCATCGAC GATCGCGCAT
CTCGAACACA ACGTCGTGCC GGAATCGATC AACCATTTCC AGCAACTGAA CTCGGCGACG
ATCTCCGGCG TGATCGTGCC TGGCGTGTCA CAGGGCGAGG TGCTCGATTT TCTGCGTAAG
GCGACCGCGC AGGCCGCGCC CGCAGGCTAT TCGGCGGATT ACTCGGGGCA ATCGCGGCAA
TTCGTGCAGG AGTCCGGCGG GTTCGTCATC ACACTGCTGT TCGCGACGAT CATCGTGTTC
CTTGCGCTTG CGGCGCAATT CGAGAGTTTC CGCGACCCGA TCGTGATTCT GGTTTCGGTA
CCCATGGCGC TGTTCGGCGC GCTGATCTTC ATCAACATCG GTTTGACGAC GCTGAACATC
TACACGCAGG TCGGGCTCGT CACGCTGATG GGGCTCGTCA GCAAGCACGG CATCCTGATC
GTCCAGTTCG CCAACGAACT GCAACACGCC GGCCGGTCGA AGCGCGAAGC GCTGGAAGAA
GCGGCGGGCG TGCGGCTGCG CCCGATTCTG ATGACGACGG CGGCGATGGC GCTCGGCGTC
CTGCCGCTCG TGGTCGCCTC GGGCGCGGGC GCCGCGGGCC GCAACGCGAT GGGCCTCGTG
ATCTTCACGG GGCTGTCGAT CGGCACGCTC TTCACGTTGT TCGTGGTGCC CGCCATGTAT
ATGTTTCTCG CCGCCGACCA TCATCGGGAC GCGGGCGTGC CGAAGGCGGG CTAA
|
|---|
| Protein sequence | MTFTDLFIRR PVLASVVSLL ILVLGLRSLA ALKVSQYPQT ENAVVTITTA YYGANADTIA
GFITQPLEAA IAQAQGIDYM SSTSSTGVST IIATLRLNYD ANRALTEINT QIGSVRNQLP
PQAQQPVLTV QTGQTTDAMY MGFYSDVLPS NNVTDYLLRV VKPKLDSIEG VQIAEILGGR
QFALRAWLDA TRLAAHGVTA ADVFTALGNN NYLATLGTTK GQMVSVDLNA GTDLHTVDDF
KQLVIKQKNG AIVRLEDVAN VVLGADSYDF NVAFSGKRSV FIGIKVAPDA NILDVAKRVK
AIFPGLQKQF PTGMTGEIVY DATDFVNTAI VEVIKTLVEA LLIVTAVIFL FLGSFRAVVV
PLIAMPLSLI GTFFVMQLLG YSINLLTLLA LVLAIGLVVD DAIIVVENVD RHMKEEGKAP
FDAALIAARE LGGPILAMTV VLIAVYAPIG FQGGLTGALF TEFAFSLAGA VTVSGVIALT
LSPMMCSRFF RAEQESGRFA RFVDRQFERV HRGYGRLLHA TLDTWPVFIV MGALLLAGTI
YLFMTSKSEL APEEDQGIVL SQIQGPPNAT IQQMQTYADQ VFNISKALPE YSQMFQLTGA
PTLNQGIGGV LFKTWDQRSK GAGALQQELQ QKWNQIAGAR VAAFQFPPLP GSQGLPVQFV
ISTTEPFENL NEVSQAVLQQ ARASGMFFFV DSDLKLDKPE ATLVVDRDKV ASLGLSQSDV
GQALGSALGG GYVNYFSIAG RSYKVIPQVL QTDRLNPSQV LDYYLRTPDG SVIPASTIAH
LEHNVVPESI NHFQQLNSAT ISGVIVPGVS QGEVLDFLRK ATAQAAPAGY SADYSGQSRQ
FVQESGGFVI TLLFATIIVF LALAAQFESF RDPIVILVSV PMALFGALIF INIGLTTLNI
YTQVGLVTLM GLVSKHGILI VQFANELQHA GRSKREALEE AAGVRLRPIL MTTAAMALGV
LPLVVASGAG AAGRNAMGLV IFTGLSIGTL FTLFVVPAMY MFLAADHHRD AGVPKAG
|
|---|
| |