| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5958 |
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| Symbol | |
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| ID | 6279486 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | + |
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| Start bp | 2180769 |
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| End bp | 2182289 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 642617020 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_001889663 |
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| Protein GI | 187920631 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.821949 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 45 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGACG TCAACCAGCG TATTCTCCGG CAGCGGCGCC TGTGCGTCGT GCTATGCGGC
TGCGCCGCGG TGGCCGGCTG CATGGTCGGT CCTGACTACC GCACTCCCCC CGCGCCGGCT
ACCGACACCT ACACCGCCTC GCCACTGCCC GAGCAAACGG CCTCTTCGCC AGGGGCGGCC
GGCTTGCCGC AACGCTTCGT GCCGGGACAG GACATTCCCG CCGCCTGGTG GGTGCTCTTT
CATTGCGAAC CGCTCGATAC GCTGATCCGT CAGGCGCTCG TCAACAGTCC GAACATTGCC
GCGGCGCAAG CGGCATTGCG GCAGGCGCGC GAAAACTTCT CGGCGCAAGC CGGCGGCACC
CTTCTGCCCA GCGTCGATGC GCAACTCGGC GCCACGCGCC AGAAATTTAA CGGCATCACG
TTCGGCGAGC CCGGAGTCGT GGAGGAATTC AATCTCTATA ACGCGTCGGT GAACGTGTCG
TACAAACTCG ACGTGTTCGG CGGCACACGG CGCGAACTCG AAGCGTTGCA CGCGCAAGTC
GATTACCAGC GCTTCCAGTT GCAGGCCGCC TATCTCGCGA TGTCGGCGAA CATCGTGACC
GCTGCCGTGA AGGAGGCGTC GTTGCGCGCG CAGATCGAGG CGACCGAACA GATCGCCGCA
CAAGAAGACG AGCAATTCAC CGTACTTGGC AAGCAGTTCG AACTAGGCGG CGTGGGCCGC
ACGGCGGTGC TCGCACAGCA GACCCTATTG GCGCAGACCC GCGCAACGCT GCCGCCTCTG
CAACAGCAAC TCGACCAGGT GCGCCACCAG CTCGCCGTGC TGGCCGGCAA ACTGCCCAGC
GATACCGCCT TGCCCGAATT CAGGCTCGAG ATGTTTTCGT TACCCGAGGC GCTGCCTGTC
AGCCTGCCAT CCGCGCTAGT GCAACAGCGG CCCGACATTC TCGCCGCCGA TGCCGTGCTG
CATCAGGCCA GCGCGCAAAT CGGCGTGGCC ACCGCCGCGA TGTATCCGCA GATTACGCTG
TCGGCCAGCT ACGGCGCCGA GGCGCTCACG CCGGCGCAGG TGTTCAAGGC GGGCAGCACG
ATCTGGAGCC TCGGCGCGGG CCTGCTGCAA CCGGTCTTCC ACGGCGGACA GTTGAGCGCG
CAGAAGCGCG CGGCGGAGGC GGCGTACGAG CAGGCCGACG CGCAATACCG CGAAACGGTG
CTGCTGGCGT TCCAGAACGT CGCGGATTCG CTGCGCGCGC TCGATCACGA CGCGACCGGC
CTGCAAGCGC AGACGCAGGC GTGGCACGCC GCGAACGACT CGCTGGAACT GACGCGTGGG
CAATATCGCG TCGGCGGGGT GAGCTACCTG TCGCTTCTCG ATGCGCAACG CCAGTACCAG
CAAACGGTAG TGAGCCTCGC GCAGGCGCAA GCCGCCCGCT ACGCCGACAC CGCAGCGCTC
TTCCAGGCGC TCGGCGGCGG CTGGTGGAAC GCCGCCGTGC CGGCCGCCGC CGCAGCATCC
GCAGCCGCAG CCGCGCATTG A
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| Protein sequence | MIDVNQRILR QRRLCVVLCG CAAVAGCMVG PDYRTPPAPA TDTYTASPLP EQTASSPGAA
GLPQRFVPGQ DIPAAWWVLF HCEPLDTLIR QALVNSPNIA AAQAALRQAR ENFSAQAGGT
LLPSVDAQLG ATRQKFNGIT FGEPGVVEEF NLYNASVNVS YKLDVFGGTR RELEALHAQV
DYQRFQLQAA YLAMSANIVT AAVKEASLRA QIEATEQIAA QEDEQFTVLG KQFELGGVGR
TAVLAQQTLL AQTRATLPPL QQQLDQVRHQ LAVLAGKLPS DTALPEFRLE MFSLPEALPV
SLPSALVQQR PDILAADAVL HQASAQIGVA TAAMYPQITL SASYGAEALT PAQVFKAGST
IWSLGAGLLQ PVFHGGQLSA QKRAAEAAYE QADAQYRETV LLAFQNVADS LRALDHDATG
LQAQTQAWHA ANDSLELTRG QYRVGGVSYL SLLDAQRQYQ QTVVSLAQAQ AARYADTAAL
FQALGGGWWN AAVPAAAAAS AAAAAH
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