| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5933 |
|---|
| Symbol | |
|---|
| ID | 6279335 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2156372 |
|---|
| End bp | 2157196 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 642616996 |
|---|
| Product | transcriptional regulator, IclR family |
|---|
| Protein accession | YP_001889639 |
|---|
| Protein GI | 187920607 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1414] Transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR02431] beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.196761 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCAAAG CCCTGCCGCC GTCTTCCGCC GTTCCCGTCA GCGCCGAACC GGCCCCGGAC
AAACCGGGCG ACTCCTATGT GCAGTCGTTC GCGCGCGGCC TCGCGGTGAT CCGTGCGTTC
GACGCCACGC GCCCGGAACA GACGCTGACC GACGTCGCCG CCGCCACCGG CCTCACGCGC
GCCGGAGCAC GCCGCATTTT GCTGACCCTG CACACGCTCG GCTATGTGGA GGCCGAAGGA
CGCCTGTTCC GCCTCACGCC GAAGATCCTC GATCTCGGCT TCGCGTATCT GACTTCCATG
CCGTTCTGGA ACCTTGCCGA GCCGGTGATG GAACAACTCT CCGCGCAGGT TCACGAGAGC
GTCTCGGCAG CCGTGCTCGA TCGCACCGAG ATCGTCTACG TGCTGCGCGT GCCGACCCAT
AAGATCATGA CGATCAACCT GTCGATCGGC AGCCGCTTGC CGGCCTATTG CACGTCGATG
GGCCGCGTGC TGCTGGCGTC GCTCGACGAC GAAGCGCTCG ACGCGACGCT GGGTTCGACG
CAGCTCTACG CACACACGCC GCGCACGGTC ACCGACAAGG AAGAGTTGAA GAAGCTGATC
GCGCAGGTGC GCCGCCAGGG CTGGGCGATC GTCGATCAGG AACTGGAAGG CGGTTTGATT
TCGCTGTCCG CGCCGATCCG CAATCGCCAG GGACGCGTGA TCGCCGCGAT GAATATCAGC
GGCAACGCAC AGCGCAATTC GGGCAAGCAG ATGGTGAAGG CGTTTCTGGA GCCGCTGCAG
CACGCCGCGC AAACCGTATC GGAGATGGTG GCACGGCGCG GGTAA
|
|---|
| Protein sequence | MSKALPPSSA VPVSAEPAPD KPGDSYVQSF ARGLAVIRAF DATRPEQTLT DVAAATGLTR
AGARRILLTL HTLGYVEAEG RLFRLTPKIL DLGFAYLTSM PFWNLAEPVM EQLSAQVHES
VSAAVLDRTE IVYVLRVPTH KIMTINLSIG SRLPAYCTSM GRVLLASLDD EALDATLGST
QLYAHTPRTV TDKEELKKLI AQVRRQGWAI VDQELEGGLI SLSAPIRNRQ GRVIAAMNIS
GNAQRNSGKQ MVKAFLEPLQ HAAQTVSEMV ARRG
|
|---|
| |