Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5922 |
Symbol | |
ID | 6277362 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 2143695 |
End bp | 2145695 |
Gene Length | 2001 bp |
Protein Length | 666 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 642616985 |
Product | GAF modulated sigma54 specific transcriptional regulator, Fis family |
Protein accession | YP_001889628 |
Protein GI | 187920596 |
COG category | [K] Transcription [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG3284] Transcriptional activator of acetoin/glycerol metabolism |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCTTACG TCTCGCAGAC CCAGCACATC GACCGCGTGC GTGGCGCCAT CGAAGGACGC CTGCCCGCGC CCGCCGATTC TCCGCGGCTC GTCTCGTCGT GGCAGCGTTC GTTCGAACAG TACCGGCTCG ACCCCGGCGC CGTGATCGGA CCGCGCGTGC TGAGCTCGGC CGAATTGCGC GAAGTGCAGG GCAAGGAAGA AGCCTTTCTG CGTGCGTCCG GGCAATGTCT GTCACGTCTG CACGACATGA TTCGCGTTGC CGACTATTGC GTGATGCTCA CCGACGCGCA CGGCGTCACC ATCGACTACC GCATCGACCG CGATCGCCGC AGCGATTTCA AGCATGCGGG CCTGTATATC GGTTCGTGCT GGTCCGAGCG CGAGGAAGGC ACCTGCGGCG TGGCGAACGT GCTGACCGAT CTTGCGCCGA TCATCGTGCA CAAGACCGAT CATTTCCGCG CGGCGTTCAC CACGCTCACC TGCAGCGCGG CGCCGATCTT CGCGCCGACG GGAGAGATGA TCGGCGTACT CGATGCATCC GCCGTGCAGT CGCCGGATAA CCGCGACAGT CAGCGGCTCG TGTTTCAACT GGTGCGGCAA AGCGCCGGTC TGATCGAAGA CGGGTACTTC CTCAATCAAA CTAGCCAGCA TTGGGTTCTG TTCGGTCATT CGAGCCGCAA CTTTGTCGAG GCGCAGCCCG AAGTGCTGAT CGCCTTCGAC GAATGCGGCA ATCTCGTCGC GGCCAATCGC AAGGCGCGCG AGTGCATTCC GGCGCTCAAC GGTCCGCGCC ACATCGACGA TGTATTCGAC ACATCGGGCT CGCATCTGCA CGACATCGCG CGCACGGATG CGATTGTCGG CTTGCGCCTG CGCGCAACCG GCACGACGCT GTATGCGCGG ATTCGTGCGC CGCTCAGGCG CATCTCGCGC GCGGCGTCCA CGCTGAACGA AGGCGCCGCA CGGTCGTCGC AAAGCGCGTC GCAAAACGAT CTGCACCTCG GCGCACTCGG CCGTTTTCTG CACAGCGCGG AGCCGCGGAT CGCGCACAAC GCGGCCGTCG CGTTGCGCGT GATGGGCAAG CGTCTGCCGA TTCTGATTCT CGGCGAGACC GGCGTCGGCA AGGAGGTGTT CGCGCACGCG GTGCACGATT CGGGCGCGCG GCGCGCGAGG CCGTTTATCG CGGTGAATTG CGGCGCGATT CCCGAATCGC TGATCGAAAG CGAATTGTTC GGCTACGCGC CCGGCGCCTT CACCGGTGCA CGCAGCCGCG GCGCGCGCGG CAAGATTGCG CAGGCGCATA CAGGTACGCT GTTTCTCGAT GAGATCGGCG ACATGCCGCT CGATCTGCAA ACGCGGCTGC TGCGCGTGCT GGCCGAAGGC GAAGTCACGC CGCTCGGCGC CGATGCACCC GTGCGCGTGG ATATCGACGT GATTTGCGCC ACACACCGCG ATCTCACGCA GATGGTCGCG GCCGGCACGT TCCGCGAAGA CCTCTATTAC CGGCTAAGCG GCGCGTCCTT GCCAATACCG CCGCTGCGCG AGCGCGCGGA TATCCGCGAC GTGATCGAAG CGGTCTTCGA CGAAGAAGCG CAAATGGCCG GCCACGTGCT CACGCTGGAC CCGCAACTCG CCGAACGTCT CGCAGGATTC GCATGGCCGG GCAACATTCG CCAGTTGCGC AACGTGCTGC GTTACGCGTG TGCGATCTGC GACAGCGCGC GCGTGGAATT GCGCCATGTC GCGCCGGATA TGGCGGCGTT GCTCGCACCC GAGGCCGTGC ATAAACCAGC GTTATTGCGG ATCGATCCGC ATGACGGCCG GCAGCGGGAT GCGCTGCAGG CCCCGCGGCA GGACCCGCGC GAAGAGCGTG CACGCATTAT CGACGCGCTC ACACGCCACC AATGGCGACC CAACGCAGCG GCGCAAGCGC TCGGTATGTC GCGCGCCACT TTGTATCGGC GCATTGCGTC GTTGGGCATC GTCGCGCCGC ATCGACGGTG A
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Protein sequence | MPYVSQTQHI DRVRGAIEGR LPAPADSPRL VSSWQRSFEQ YRLDPGAVIG PRVLSSAELR EVQGKEEAFL RASGQCLSRL HDMIRVADYC VMLTDAHGVT IDYRIDRDRR SDFKHAGLYI GSCWSEREEG TCGVANVLTD LAPIIVHKTD HFRAAFTTLT CSAAPIFAPT GEMIGVLDAS AVQSPDNRDS QRLVFQLVRQ SAGLIEDGYF LNQTSQHWVL FGHSSRNFVE AQPEVLIAFD ECGNLVAANR KARECIPALN GPRHIDDVFD TSGSHLHDIA RTDAIVGLRL RATGTTLYAR IRAPLRRISR AASTLNEGAA RSSQSASQND LHLGALGRFL HSAEPRIAHN AAVALRVMGK RLPILILGET GVGKEVFAHA VHDSGARRAR PFIAVNCGAI PESLIESELF GYAPGAFTGA RSRGARGKIA QAHTGTLFLD EIGDMPLDLQ TRLLRVLAEG EVTPLGADAP VRVDIDVICA THRDLTQMVA AGTFREDLYY RLSGASLPIP PLRERADIRD VIEAVFDEEA QMAGHVLTLD PQLAERLAGF AWPGNIRQLR NVLRYACAIC DSARVELRHV APDMAALLAP EAVHKPALLR IDPHDGRQRD ALQAPRQDPR EERARIIDAL TRHQWRPNAA AQALGMSRAT LYRRIASLGI VAPHRR
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