Gene Bphyt_5922 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5922 
Symbol 
ID6277362 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2143695 
End bp2145695 
Gene Length2001 bp 
Protein Length666 aa 
Translation table11 
GC content65% 
IMG OID642616985 
ProductGAF modulated sigma54 specific transcriptional regulator, Fis family 
Protein accessionYP_001889628 
Protein GI187920596 
COG category[K] Transcription
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG3284] Transcriptional activator of acetoin/glycerol metabolism 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTACG TCTCGCAGAC CCAGCACATC GACCGCGTGC GTGGCGCCAT CGAAGGACGC 
CTGCCCGCGC CCGCCGATTC TCCGCGGCTC GTCTCGTCGT GGCAGCGTTC GTTCGAACAG
TACCGGCTCG ACCCCGGCGC CGTGATCGGA CCGCGCGTGC TGAGCTCGGC CGAATTGCGC
GAAGTGCAGG GCAAGGAAGA AGCCTTTCTG CGTGCGTCCG GGCAATGTCT GTCACGTCTG
CACGACATGA TTCGCGTTGC CGACTATTGC GTGATGCTCA CCGACGCGCA CGGCGTCACC
ATCGACTACC GCATCGACCG CGATCGCCGC AGCGATTTCA AGCATGCGGG CCTGTATATC
GGTTCGTGCT GGTCCGAGCG CGAGGAAGGC ACCTGCGGCG TGGCGAACGT GCTGACCGAT
CTTGCGCCGA TCATCGTGCA CAAGACCGAT CATTTCCGCG CGGCGTTCAC CACGCTCACC
TGCAGCGCGG CGCCGATCTT CGCGCCGACG GGAGAGATGA TCGGCGTACT CGATGCATCC
GCCGTGCAGT CGCCGGATAA CCGCGACAGT CAGCGGCTCG TGTTTCAACT GGTGCGGCAA
AGCGCCGGTC TGATCGAAGA CGGGTACTTC CTCAATCAAA CTAGCCAGCA TTGGGTTCTG
TTCGGTCATT CGAGCCGCAA CTTTGTCGAG GCGCAGCCCG AAGTGCTGAT CGCCTTCGAC
GAATGCGGCA ATCTCGTCGC GGCCAATCGC AAGGCGCGCG AGTGCATTCC GGCGCTCAAC
GGTCCGCGCC ACATCGACGA TGTATTCGAC ACATCGGGCT CGCATCTGCA CGACATCGCG
CGCACGGATG CGATTGTCGG CTTGCGCCTG CGCGCAACCG GCACGACGCT GTATGCGCGG
ATTCGTGCGC CGCTCAGGCG CATCTCGCGC GCGGCGTCCA CGCTGAACGA AGGCGCCGCA
CGGTCGTCGC AAAGCGCGTC GCAAAACGAT CTGCACCTCG GCGCACTCGG CCGTTTTCTG
CACAGCGCGG AGCCGCGGAT CGCGCACAAC GCGGCCGTCG CGTTGCGCGT GATGGGCAAG
CGTCTGCCGA TTCTGATTCT CGGCGAGACC GGCGTCGGCA AGGAGGTGTT CGCGCACGCG
GTGCACGATT CGGGCGCGCG GCGCGCGAGG CCGTTTATCG CGGTGAATTG CGGCGCGATT
CCCGAATCGC TGATCGAAAG CGAATTGTTC GGCTACGCGC CCGGCGCCTT CACCGGTGCA
CGCAGCCGCG GCGCGCGCGG CAAGATTGCG CAGGCGCATA CAGGTACGCT GTTTCTCGAT
GAGATCGGCG ACATGCCGCT CGATCTGCAA ACGCGGCTGC TGCGCGTGCT GGCCGAAGGC
GAAGTCACGC CGCTCGGCGC CGATGCACCC GTGCGCGTGG ATATCGACGT GATTTGCGCC
ACACACCGCG ATCTCACGCA GATGGTCGCG GCCGGCACGT TCCGCGAAGA CCTCTATTAC
CGGCTAAGCG GCGCGTCCTT GCCAATACCG CCGCTGCGCG AGCGCGCGGA TATCCGCGAC
GTGATCGAAG CGGTCTTCGA CGAAGAAGCG CAAATGGCCG GCCACGTGCT CACGCTGGAC
CCGCAACTCG CCGAACGTCT CGCAGGATTC GCATGGCCGG GCAACATTCG CCAGTTGCGC
AACGTGCTGC GTTACGCGTG TGCGATCTGC GACAGCGCGC GCGTGGAATT GCGCCATGTC
GCGCCGGATA TGGCGGCGTT GCTCGCACCC GAGGCCGTGC ATAAACCAGC GTTATTGCGG
ATCGATCCGC ATGACGGCCG GCAGCGGGAT GCGCTGCAGG CCCCGCGGCA GGACCCGCGC
GAAGAGCGTG CACGCATTAT CGACGCGCTC ACACGCCACC AATGGCGACC CAACGCAGCG
GCGCAAGCGC TCGGTATGTC GCGCGCCACT TTGTATCGGC GCATTGCGTC GTTGGGCATC
GTCGCGCCGC ATCGACGGTG A
 
Protein sequence
MPYVSQTQHI DRVRGAIEGR LPAPADSPRL VSSWQRSFEQ YRLDPGAVIG PRVLSSAELR 
EVQGKEEAFL RASGQCLSRL HDMIRVADYC VMLTDAHGVT IDYRIDRDRR SDFKHAGLYI
GSCWSEREEG TCGVANVLTD LAPIIVHKTD HFRAAFTTLT CSAAPIFAPT GEMIGVLDAS
AVQSPDNRDS QRLVFQLVRQ SAGLIEDGYF LNQTSQHWVL FGHSSRNFVE AQPEVLIAFD
ECGNLVAANR KARECIPALN GPRHIDDVFD TSGSHLHDIA RTDAIVGLRL RATGTTLYAR
IRAPLRRISR AASTLNEGAA RSSQSASQND LHLGALGRFL HSAEPRIAHN AAVALRVMGK
RLPILILGET GVGKEVFAHA VHDSGARRAR PFIAVNCGAI PESLIESELF GYAPGAFTGA
RSRGARGKIA QAHTGTLFLD EIGDMPLDLQ TRLLRVLAEG EVTPLGADAP VRVDIDVICA
THRDLTQMVA AGTFREDLYY RLSGASLPIP PLRERADIRD VIEAVFDEEA QMAGHVLTLD
PQLAERLAGF AWPGNIRQLR NVLRYACAIC DSARVELRHV APDMAALLAP EAVHKPALLR
IDPHDGRQRD ALQAPRQDPR EERARIIDAL TRHQWRPNAA AQALGMSRAT LYRRIASLGI
VAPHRR