| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5887 |
|---|
| Symbol | |
|---|
| ID | 6279203 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 2104254 |
|---|
| End bp | 2105492 |
|---|
| Gene Length | 1239 bp |
|---|
| Protein Length | 412 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642616950 |
|---|
| Product | extracellular solute-binding protein family 1 |
|---|
| Protein accession | YP_001889593 |
|---|
| Protein GI | 187920561 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1653] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 47 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACAGCA AAAAACTGGT CTTGCGAGGC GTGGTTGCGG CGCTGGCGTT GTATGGCGTC
GTCGCGCAGG CGGAGCCGTT GAAGGCCAAC GTGATTCACT GGTGGACCTC GGGCGGCGAG
TCGGCCGCGA TTCGCCAGTT TGCCGATGCG TATAACAAGG CCGGCGGGCA GTGGGTCGAC
AACGCGGTGG CGGGAGCCGA TCAGGCGCGC TCCACGGCGA TCAACCGGAT CGTGGGCGGA
GATCCACCCA CGGCTGCGCA GTTCAATACG TCCAAGCAGT TTCACGACCT GATCGATCAG
GGCCTGCTCA ACAATGTCGA CGACGTCGCC GCGAAAGAGA ACTGGAACGG CGTGTTCCCG
CAGTCGATTA TCGACAGCAT CAAGGTGAAG GGACATTACT ACGCCGCGCC TGTCGATATC
CATATGCCGG CGTGGTTCTT CTACTCGAAG CCGGTGTTCC AGAAAGCGGG CATCGCTGGC
GAGCCGAAGA GCTATGACGA GTTCATCGCC GATCTCGGCA AGCTGAAAAC CGCGGGCGTG
ATTCCGCTCG CGCTCGGCGG CCAGCCCTGG CAGGAGAAAA TCACCTTCGA CGCGGTGCTG
GCGGACGTGG GAGGCCCCGA TCTCTACATG AAGGTGTATC GCGATCGCGA CATGAACGCC
GTGAAGTCGG ACGCGTTCAA GAAAGTGCTG GCCTCGTTCA AACGCCTGCA CGATTTCGTC
GACCCCGGTT CGCCCGGCCG CAACTGGAAC GACGCCACGG CGCTCGTGAT TTCCGGCAAG
GCGGGCGTGC AGATCATGGG CGACTGGGCC AAGGGTGAAT TCTCGGCGGC CAATCAGAGC
GCGGGCAAGG ACTTCGGCTG CTTCCCGGGT TTCGGTCCGC ATTCGCCGTA TCTGGTCGCG
GGCGACGTAT TCGTGTTCCC GAAAACGGAC AATCCCACCA CGATCAAGGC GCAGAATCTG
CTTGCCACGG TGATGACCTC GCCGGCCGCG CAAGTGGCAT TCAGCGCGAA GAAAGGCTCG
ATTCCGATTC GTCCCGACGT GGACGGCAGC AGTCTCGACA TCTGCGCGAA GGAGGGCATT
GCGATCATGA AGGACAAGTC GCGTCAGCTG CCGAATCCGG AAATGCTGCT CTCGCCTGAC
ACGCAGGGCG CCTTGATCGA CGTCGTCACT AACTTCTGGA ACAAGAACCA GTCGGTCGAC
GACGCGCAGA AAGCGTTCGC CAGTGCGTTG AAGAGCTAG
|
|---|
| Protein sequence | MNSKKLVLRG VVAALALYGV VAQAEPLKAN VIHWWTSGGE SAAIRQFADA YNKAGGQWVD
NAVAGADQAR STAINRIVGG DPPTAAQFNT SKQFHDLIDQ GLLNNVDDVA AKENWNGVFP
QSIIDSIKVK GHYYAAPVDI HMPAWFFYSK PVFQKAGIAG EPKSYDEFIA DLGKLKTAGV
IPLALGGQPW QEKITFDAVL ADVGGPDLYM KVYRDRDMNA VKSDAFKKVL ASFKRLHDFV
DPGSPGRNWN DATALVISGK AGVQIMGDWA KGEFSAANQS AGKDFGCFPG FGPHSPYLVA
GDVFVFPKTD NPTTIKAQNL LATVMTSPAA QVAFSAKKGS IPIRPDVDGS SLDICAKEGI
AIMKDKSRQL PNPEMLLSPD TQGALIDVVT NFWNKNQSVD DAQKAFASAL KS
|
|---|
| |