Gene Bphyt_5841 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBphyt_5841 
Symbol 
ID6278958 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia phytofirmans PsJN 
KingdomBacteria 
Replicon accessionNC_010676 
Strand
Start bp2052974 
End bp2055637 
Gene Length2664 bp 
Protein Length887 aa 
Translation table11 
GC content66% 
IMG OID642616905 
ProductPAS/PAC sensor hybrid histidine kinase 
Protein accessionYP_001889548 
Protein GI187920516 
COG category[T] Signal transduction mechanisms 
COG ID[COG0642] Signal transduction histidine kinase 
TIGRFAM ID[TIGR00229] PAS domain S-box 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value0.111175 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCTTTTC CGGCACACGA CCACGGCTGC TCCGGCTGGC GCGGGGAGAT GGCGCAGCGC 
ATCAGCGCAT TCGACTGGGC CGCCACCGGC CTCGGCGCCA TCGAAAACTG GCCGCGCAGT
CTGACCGCGA CCGTCCAGTT GCTGCTCGCC TCGCCCGTGC CTCTGGTGCT GCTGTGGGGC
AAGCCCGGCT ACATGATCTA CAACGACGCC TACGCGGTCT TCGCAGGCGG CAGGCATCCC
TATCTGCTCG GCTGCCCGGT CGAACACGGC TGGCCGGAAG TCGCCGATTT TAACCGGCAT
GTCATGGCCA CGTGTCTCGC GGGCGGCACG CTGTCGTATC GCGACAAGGA GTTGGTGCTG
CTGCGCGACG GCAAACCCGA AGACGTGTGG ATGGATCTCT ACTACAGCCC CGTCGCCGAC
GACAGCGGCG CGCCGGCCGG TGTGCTGGCG GTAGTCGTCG AAACCACCAC GCGCGTGCTC
ACCGAACGCT GGCGGCAGCG CGCCGAAGCC GAACTGCACG AGACCAACGA ACGGCTGCAG
CTCGCGCTCA ATACCGGCAC GGTGCTCGGC ACCTGGGTGC TGGACGTGCG CACGGGCAAG
GTCAGCGGCG ACGAACGTTT CGCGCGCACT TTTTCCTTTC GGCAGGAAGA AGCCGCGAAA
GGAGTCGAGC GCCACGCCGC CGTCCACATG ATTCATCCGG ACGACCAGGC GCTCAACGAC
CAACTGACCG CCGAGGCGAT CCGCACACGG CAGCCGTTTC GCGCCGAGTT TCGAATCCGG
CGGCCCGACG GCGACTACAT CTGGGTGCAG GCAAACGGCC AGTGCGAGTT CGACGAGCAT
GGCGAACCGA CGCGTTTTCC CGGCGTGCTG ATCGATATTC ACGAACGCAA GATCGCCGAA
CAGTCGCTGC GCCAGTTGAC CGAGACGCTC GAACAGCGCG TCGCCGACGC GCTCGCGGCG
CGCGCTTTGG CCGAGGAACA ATTGCGCCAG GCGCAGAAGA TGGAAGCGAT CGGCAGCCTC
ACGGGCGGCG TCGCGCACGA CTTCAACAAC GTGCTGCAGG TGATCAACGG CAACCTGCAA
ATGCTCGCCG CCGATGCCGG CGGCCACCCG GCCACCCTAC GCCGCCTGTC CGCCGCAACG
GACGCGGTCA AGCGCGGCGC GAAACTGGCC GCGCATCTGC TCGCCTTCGC GCGGCGCCAG
CCGCTCTCTC CCACTGTGCT GAATCCGCGC CGCCTGCTGA GCGGCATGAG CGAGATGCTG
CATCGCGCAC TCGGCGAAAC CGTGCGCATC GACACGGTCC TGAACGACGA TCTGTGGAAC
GTGCAGGCCG ATCGCAATCA ACTGGAAAAC GCGCTGCTCA ATCTCGCGAT CAACGCGCGC
GACGCCATGC AAGGAGACGG CACGCTCACC GTGCGAGCGG CCAACCGCGT GCTGGACACC
ACGTTCTGCC AGGACAAACC CGAACTGTCG CCGGGTGAAT ACGTGGTGTT TTCCGTCGCC
GACAGCGGCG CCGGCATGCC GCCCGAGATC CTGCAACGCG TGTTCGAACC GTTTTTCACG
ACCAAGCCCG ACGGCCACGG CACCGGCCTC GGCCTGAGCA TGGTGTTCGG CTTTCTCAGG
CAAAGCGGTG GCCATACGTT GATCGAGAGC GAAGTGGGAC GCGGCACTAC GGTCTCGCTG
TTTTTCCCGC GCTGCTGCGA AGCCGAAACC TCGGAAGCGG TCGACGACAC CGAGGCGCCC
AGCGGCGGCG GCGAAACGAT TCTGGTCGTC GAAGACGATG CCGACGTGCG CCTGACCGCC
GTCGAAATGC TCGCGCAACT CGGCTACAAG GTGCTGACCG CGTCGAGCGG CGACGCGGCG
ATCGAATTCA TCGAAAGCGA CGTGCCGATC GATCTGCTGT TCACGGATGT GGTGATGCCC
GGCAAGATCA AAAGCGTGGA ACTCGCGCAG CGAGCCGCGA CTCGCTCGCC CGCGGTGCCG
ACGCTCTTCA CTTCCGGCTA TGCGCGCGAT GAAATCGTCC ACCACGGCAA ACTCGACGCC
GGTATTACGT TGCTCTCGAA ACCCTACCGG CGCGACGATC TCGCCCGCAA GGTGCGCGGC
GTGTTGCGCG CCGGTGCGGC CGCGGCGGCC GGCATGGCGC TGCCCGCGTC CGTGGCCGAA
GGACAGATCG CCGCCTGCGT GCCGCCCGCC GCTTACGACC GCGTCGGGGA ATCCAGTCAG
GAAAGCCGGC CGCCCGAGGT CGAGGCCATT CCGCAAACAA AGTCTTCTTT GGCGAGGGCG
CGCTCGCCCG GCACGCCGGC TCGTGTGCTG CTGGTCGAAG ACGACATGAA CTCACGCGAA
GCATTCAACG ACCTGCTGAA CGCGCTGGGA CTCGATTGCA CTGCGGTTGG AAGCGCGGAA
GAAGCGCTGC CGCTCGTACC CGCGCAACAC TTCGACATCC TCTTCACCGA TCTCACATTG
CCCGGCATGT CCGGCGACTG CCTCGCGCGC GCCATGTTGC GGCAGCAGCC GGGCATTCGC
GTGTTGCTGG TGTCGGGCTA CGGCAAGAGT GCGCAGATCG GCGACGCGAT TCCAGGCGCG
CGGCTGCTCG GCAAACCGCT CGATATCGCG GAACTGCGGC GCGAACTCGC GGGCTGGATC
GATCACACCG AAGAAGCATC CTAA
 
Protein sequence
MPFPAHDHGC SGWRGEMAQR ISAFDWAATG LGAIENWPRS LTATVQLLLA SPVPLVLLWG 
KPGYMIYNDA YAVFAGGRHP YLLGCPVEHG WPEVADFNRH VMATCLAGGT LSYRDKELVL
LRDGKPEDVW MDLYYSPVAD DSGAPAGVLA VVVETTTRVL TERWRQRAEA ELHETNERLQ
LALNTGTVLG TWVLDVRTGK VSGDERFART FSFRQEEAAK GVERHAAVHM IHPDDQALND
QLTAEAIRTR QPFRAEFRIR RPDGDYIWVQ ANGQCEFDEH GEPTRFPGVL IDIHERKIAE
QSLRQLTETL EQRVADALAA RALAEEQLRQ AQKMEAIGSL TGGVAHDFNN VLQVINGNLQ
MLAADAGGHP ATLRRLSAAT DAVKRGAKLA AHLLAFARRQ PLSPTVLNPR RLLSGMSEML
HRALGETVRI DTVLNDDLWN VQADRNQLEN ALLNLAINAR DAMQGDGTLT VRAANRVLDT
TFCQDKPELS PGEYVVFSVA DSGAGMPPEI LQRVFEPFFT TKPDGHGTGL GLSMVFGFLR
QSGGHTLIES EVGRGTTVSL FFPRCCEAET SEAVDDTEAP SGGGETILVV EDDADVRLTA
VEMLAQLGYK VLTASSGDAA IEFIESDVPI DLLFTDVVMP GKIKSVELAQ RAATRSPAVP
TLFTSGYARD EIVHHGKLDA GITLLSKPYR RDDLARKVRG VLRAGAAAAA GMALPASVAE
GQIAACVPPA AYDRVGESSQ ESRPPEVEAI PQTKSSLARA RSPGTPARVL LVEDDMNSRE
AFNDLLNALG LDCTAVGSAE EALPLVPAQH FDILFTDLTL PGMSGDCLAR AMLRQQPGIR
VLLVSGYGKS AQIGDAIPGA RLLGKPLDIA ELRRELAGWI DHTEEAS