| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5838 |
|---|
| Symbol | |
|---|
| ID | 6279421 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | + |
|---|
| Start bp | 2045332 |
|---|
| End bp | 2046513 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 642616902 |
|---|
| Product | endo-1,4-D-glucanase |
|---|
| Protein accession | YP_001889545 |
|---|
| Protein GI | 187920513 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3405] Endoglucanase Y |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 0.35562 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGGGTTC GAATCAACAA GAAAATCGGC GTGGCGCTGG CGCTTGGGCT AGCGGCGTCC
GTGAGTTTCG CCAATCTCGT CAAGGTGGCC CAGACCACCG CCGCGCCGGG CGCCTGTGGC
GACTGGAGCG GCTATCGCGC GTTCGTCGAA CGCTTCGTGC AGGCCGACGG CCGCGTGATC
GACTACTCCA CGCCGGCGCA GCAAACCACT TCCGAAGGTC AGTCGTACGC GCTCTTCTTC
GCGCTGGTCG CGAACGACCG CGCGACTTTC GACCGGCTGC TCGGCTGGAC CCGCACCAAT
CTCGCGGGCA ATCAGTTCGA CGCGCAGAAC ATGCGGTTGC CGTCGTGGCA ATGGGGCAGA
AAAGCCGACG GCTCGTATGG CGTGCTCGAT CCGAATTCCG CTTCGGACTC CGACTTGTGG
ATCGCTTACG ATCTGCTGCA AGCGGGCCGC CTGTGGCATG AGGCGGCTTA CACGCAGTTG
GGCGAGGCGC TGGCCGCGCA GATCGCGCGT CAGGAAATGA CCACCTTGCC GGGCGTCGGG
CCGATGCTGT TGCCTGGACC GCAAGGCTTC AAAAGCGGCG GCGTGACGCG CCTGAATCCG
AGCTATCTGC CGCTGCCGGT GCTGCGCTCG CTAGCGCACG ACATGCCGAA CGGCCCGTGG
GGCAAGCTCG CCGACAGCGC CTACAAGCTT ATCAAGACCA CCGCGCCGCA AGGCTTCGCG
CCCGACTGGG CCGCCTGGCA AAACGGCCAG TTCGTGGTCG ATCCGAAAAA CGGCGACACC
GGCAGCTACG ACGCGATCCG CGTCTATCTG TGGGCGGGCC TCGCCTCGCC CGCCGATCCG
CTCGCCAAAC CCTGGCTCGC GGCGCTCGGC GGCATGCGCG CCCGCGTCGC GCAAACCGGC
TTCCCGCCGG AGAAGGTTTC ATCGACCAGC GGCACGGCCA GCGGCGAAGG ACCGCTCAGT
TACTGGGCTG CACTCGCGCC ATACTTCAAG GCGCTCGGCG ACGAGCGCGG CCTCGGCCTC
GCGCGCACGC ATCTCGCGGC GCTCGACACC AACGTGCCGG GTCGCGAACC GGTTTATTAC
GATCGTGTGC TGGGGTTGTT CGGCACGGGT TTCATCGACG GCCGCTATCG TTTCGACGAA
GCCGGACGTC TCGTGCCGAG CTGGAGAAAG GAATGCGACT GA
|
|---|
| Protein sequence | MRVRINKKIG VALALGLAAS VSFANLVKVA QTTAAPGACG DWSGYRAFVE RFVQADGRVI
DYSTPAQQTT SEGQSYALFF ALVANDRATF DRLLGWTRTN LAGNQFDAQN MRLPSWQWGR
KADGSYGVLD PNSASDSDLW IAYDLLQAGR LWHEAAYTQL GEALAAQIAR QEMTTLPGVG
PMLLPGPQGF KSGGVTRLNP SYLPLPVLRS LAHDMPNGPW GKLADSAYKL IKTTAPQGFA
PDWAAWQNGQ FVVDPKNGDT GSYDAIRVYL WAGLASPADP LAKPWLAALG GMRARVAQTG
FPPEKVSSTS GTASGEGPLS YWAALAPYFK ALGDERGLGL ARTHLAALDT NVPGREPVYY
DRVLGLFGTG FIDGRYRFDE AGRLVPSWRK ECD
|
|---|
| |