| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5749 |
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| Symbol | |
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| ID | 6277347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia phytofirmans PsJN |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010676 |
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| Strand | - |
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| Start bp | 1953765 |
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| End bp | 1955453 |
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| Gene Length | 1689 bp |
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| Protein Length | 562 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 642616819 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_001889462 |
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| Protein GI | 187920430 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 0.718044 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 39 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAAGATT TTCAGGTGCT CGATCACATC ACGGACGGGG TGATGTCGCT CGACCGGGAG
TGGAAGTTTC GAAACATCAA CCGCACCGCT GCGCGACTGC TGAAGCGCCG GCCGGCGGAT
CTGCTGGGCC AGGAGATCTG GGCCGAATAC CCGGACCTCA TTGGGTCGAG CTACGAGACG
GCCTATCGGC AGGCGGCCGA GACCGGTCTG CCCAGCAGTG CAACCGCCTT CTACGCGCCG
CTCGATACAT GGTTCGAAGT GCGGGCGTTT CCATGCGAGG ACGGCCTCAT CGTGCTGGTT
CGCGACGTGA CCGAAGCGCG TGCGATCTCC GAACTTTTGT CCCGCCAGGC CACGCACGAT
GAATTGACCG GACTCATCAA CCGGCGCGAA CTGCTGCTGC GCCTGAACCG TCTCATCGAC
GAAGGCGCGG CCGATTCTGT CGATCTGCTC TTCATCGACC TCGACCGCTT CAAGGACATC
AACGATTCGT TCGGTCACGC GGCGGGGGAT GAAGTGCTGC GCGTCGTCGG CGAGCGTCTT
TCGGACTTGC TCACCGAACG CATCCATGCA TCGCGTATTG GCGGCGACGA ATTCGTGATT
TTCCTCGTCG ACGCGCCCGA GGGCGAGGCT GTGCGAGTCG CGCGCGAGGT CATAGTGCGC
ATGCGCGAAC CTGTCCAGAC GCCTTCAGTG CGCGCGCCGG TGGGCGCGAG CATCGGCGTG
GCGCGCTACC CCGTGTCGGC GTCGGACGCA GGCGAGTTGC TACGCAACGC TGACACTGCG
ATGTATCACG CGAAGCGCGC AGGCGGCTCG CAGGTGTGGT CGTTCGGTAA GGAGGATGCG
CAGCGCCTCG CTCATCGCCT GCGGCTGCGC GCGGATCTGG AAAGCGCGAG CGCCTCGCAT
CAGTTCGAAC TGCACTACCA GCCACAACTG GATCTGGGCA CGGGCCGTGT CTACGGCGCC
GAAGCGCTTT TGCGCTGGAA CCATCCCAAG CTGGGCCTGC TCACGCCGGG CGACTTCCTC
GACGTGCTGC TTGAATCGCC CGCCTATGAG GCGACGGGTG AATGGCTAAT TCGTCGCGCG
TTCCGCCAGG CGGCGCAATG GCAGGCACCG GACCACGCGC CGTTCAAGAT CGCCGTCAAT
CTCTCGGCCA CGACGATCCA GAATTGCGAT CTCGCCGCAC TGGTTTCGGA GGCGGCCGAG
GCGTCGGGCG TGAGCGCTTC CGTACTCGAG ATCGAAGTGA CGGAGACCGT GGTCATGAGC
GACTTCGTCG CGGCGTCGCG CTCCCTTTCA GCCGTGCGAA GGCTAGGCGT AACCGTCTCG
CTCGACGACT TCGGCACCGG CTACTCGAGC CTCGCGTACC TCACACAACT GCCCGTCGAT
CGCATCAAGA TCGACAAGTC GTTCGTGCAG CGACTCACCG TTGAGGAGAC CTGTCATCAG
GCTCGAGCGA TGGTCGAAGC GATGGTGACG CTCGCGCACG CGCTGGGCAT GGGAACGGTG
GCGGAAGGCG TTGAGACCGA AACGCAACTC GCTCTCGTCA GGGAACTCGG GTGCGATGCC
GCGCAGGGTT ACTTCATCGG CCAGCCGATG CCGGCGGCGC GCATGGAGCC GTATCTGGAC
GCACGGTTTG GCCCGGCGCG GACTGCTGCG CTTACGTCGT CGCGGGGCGC ACGAAGCGGG
CCGCGCTAG
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| Protein sequence | MEDFQVLDHI TDGVMSLDRE WKFRNINRTA ARLLKRRPAD LLGQEIWAEY PDLIGSSYET
AYRQAAETGL PSSATAFYAP LDTWFEVRAF PCEDGLIVLV RDVTEARAIS ELLSRQATHD
ELTGLINRRE LLLRLNRLID EGAADSVDLL FIDLDRFKDI NDSFGHAAGD EVLRVVGERL
SDLLTERIHA SRIGGDEFVI FLVDAPEGEA VRVAREVIVR MREPVQTPSV RAPVGASIGV
ARYPVSASDA GELLRNADTA MYHAKRAGGS QVWSFGKEDA QRLAHRLRLR ADLESASASH
QFELHYQPQL DLGTGRVYGA EALLRWNHPK LGLLTPGDFL DVLLESPAYE ATGEWLIRRA
FRQAAQWQAP DHAPFKIAVN LSATTIQNCD LAALVSEAAE ASGVSASVLE IEVTETVVMS
DFVAASRSLS AVRRLGVTVS LDDFGTGYSS LAYLTQLPVD RIKIDKSFVQ RLTVEETCHQ
ARAMVEAMVT LAHALGMGTV AEGVETETQL ALVRELGCDA AQGYFIGQPM PAARMEPYLD
ARFGPARTAA LTSSRGARSG PR
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