Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5679 |
Symbol | |
ID | 6280446 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1883195 |
End bp | 1884280 |
Gene Length | 1086 bp |
Protein Length | 361 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642616752 |
Product | porin Gram-negative type |
Protein accession | YP_001889395 |
Protein GI | 187920364 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3203] Outer membrane protein (porin) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 0.841044 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAATCGA ACATGAAGAA GGCGACTTTG AGCTTCACCT GCGCCGGACT TTCCGGACTT GCAGCCGGCG TGCAGGCGCA ATCGAGCGTG ACCATGTACG GCATTATGGA TGCGGGGGTC GAGTACGTGA ACCATGCGAG CGGCGCGGGC GGCGAAGGCA GCGCTGTCCG TCTGGTGTCC GGCGGCAGGA ACACCTCGCG CTGGGGTTTG CGGGGCGTCG AAGATCTCGG TGGCGGCATG AAGGCGGTGT TTCAACTGGA AAGCGGCATC AACATCGCCA ACGGACAGTT CGACGACGGA CCCGACTCGA TCTTCGCCCG CCGCGCCTTT ATCGGTCTGA AAAGCCGCTA CGGGCAACTC ACGCTCGGCC GCAATTTCAC GACCACCTTC GACTACATGC TGCCGTTCGA TCCGATGGGT TATGCGCCGA ACTACTCGTG GGGCGTCTCC TCGACAGCAG CAGCCGGCCG GCGCGATCTG ATCTTCGTGC GTTCGGCCAA CGCCGTGCGT TACGACGGCA CGTACTCCGG CTTGAAGTTC GGCGCGCTGT ACGGCTTCGG CAATGTGCCC GGAAACATGA AGACAAGCTC GAAGTACAAC GTCGGTCTCG GCTACGAGCG GGGTCCGTTC GCCGCGGTCG CGACATTCGA CCGGCAAAAT GGCGCGAGCG ACAGCGTCAT ACCCGCCGAC ATCACCGATT ACATCCAGGG CATTCATGCG GGGGTGAGCT ATGACTTCGG CGCTGTGAAG GCGATGGCGG GCTATCGCAC CTATCAGCGC ACGTTCCGCA CCCAACAGCA AACGCAGCGC AGCAGCACGT ACTGGATCGG TGCTCAATAC GAGGTGACAC CCGTCGTGAC GCTGTCCGGC GCGGTCTACT ATCAGGACGT CAAGAATAGC GACGGCGGCG ATCCGACGCT GTTCTCGGTG CGCGGGCAGT ATGCCCTGTC GAAACACACC GTGCTGTATC TGTCGGGCGC CTATGCGATG ACCGGGCACG GAAAGCTGGT CAGCGTGTCG CGTGACCTGG CAGGCGCGTC GGATACGCAG GTGGGTGTCA CCGTGGGTGT TCAGCAGCGG TTCTGA
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Protein sequence | MKSNMKKATL SFTCAGLSGL AAGVQAQSSV TMYGIMDAGV EYVNHASGAG GEGSAVRLVS GGRNTSRWGL RGVEDLGGGM KAVFQLESGI NIANGQFDDG PDSIFARRAF IGLKSRYGQL TLGRNFTTTF DYMLPFDPMG YAPNYSWGVS STAAAGRRDL IFVRSANAVR YDGTYSGLKF GALYGFGNVP GNMKTSSKYN VGLGYERGPF AAVATFDRQN GASDSVIPAD ITDYIQGIHA GVSYDFGAVK AMAGYRTYQR TFRTQQQTQR SSTYWIGAQY EVTPVVTLSG AVYYQDVKNS DGGDPTLFSV RGQYALSKHT VLYLSGAYAM TGHGKLVSVS RDLAGASDTQ VGVTVGVQQR F
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