| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5670 |
|---|
| Symbol | |
|---|
| ID | 6280420 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1871952 |
|---|
| End bp | 1873133 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642616744 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_001889387 |
|---|
| Protein GI | 187920356 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.598919 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCATGTCG ATCTTCTTAC CCTCTATCTC CTTATCGTCG GAACGCTCCT CGCCAGTTGC
GCGATGACCC TCTGGGAGCA TCGGACTCAT CCCCGCCGCA GCAGGGAATT AAGGATACTG
GCAGCCGGCT ACGCCACCCT CGCCGTCGGC TGTGCCGCCG CTTTGTTTCG TCGTGACCTG
CCCGGCGCGA TGGGCTCGGG CTTGAGCAAC TTCGTGATTG TCGGCGGCTA TCTGTTGATC
CTGCGCGGCG TTGCGATCCT GAATGGCCGG AAATACGATG CGGGTTCGAT CGCCATGCTC
GTTCTGGTCG CGCTGACATG GGCCGTGTGC GGCGCGCGCT GGCAGAACGT CTTATGGAAC
TACGTGAGTG CGATTCCAAT CGCCGTGGCT TCCTGCCTGA CGTCGCGCGA GCTGCTGCGA
AGCGACGGAA TGAAATCGCT GAAGTCGCGG CACATCGCCG TGATGGTGTC GGGCGGCCAT
GGGCTCTTCT ATGCCGCCAG GGCATTCGTC TTGCCCTGGT TGGGGACGCT GTATGGGCAA
GGTCTGCTGT CCGTCGCCAG CAAAATCACG ATGTACGAAG GCGTGCTGTA TTCGGTGATT
CTGCCGATGA CCCTGCTGAC GCTGATTCGC GAAGAAACGC ATGGCCGGCT GCTGCAGGAA
TCGCAAACGG ATTATCTGAC CGGTCTTGGC AATCGCAGAT GGTTTTTCGA AGAGGGCGCA
CGCGTCATGC GCGAAGCCGG TGTATCGCGG CCCGTTTCAC TGCTTGCCTT CGATCTCGAT
CACTTCAAGC GGATCAATGA TCGATACGGT CACGAGACGG GTGACGCGGT TCTCAAGTCG
TTCGCGGCAA TTACGCGCAG CTTGACGGGG CCCGAAGCGA TGCTTGCGCG CATCGGCGGA
GAAGAATTCG CTGCCTTGCT GCCTGGCCAT GACAGCCTGC GTGCCGAAGA AGTGGGCGAT
GCCATTGTTC GACGTTTCGC GGGAACTGTC TTGCACAGGA TTAACGACGT CGACATACGA
GCGACGGTCA GCGTAGGCCT CGCGCAGCAG TCCGCAAGCG AAGCGCCCAC GCTCGCCGAC
CTGCTGGCTT CCGCCGACCA GGCGTTATAC CGCGCGAAGT CGCTTGGCGG TAATCGGCTT
GAACTGGCGC GGACCGGCGT GCGCGGCACG GCCACCTGCT GA
|
|---|
| Protein sequence | MHVDLLTLYL LIVGTLLASC AMTLWEHRTH PRRSRELRIL AAGYATLAVG CAAALFRRDL
PGAMGSGLSN FVIVGGYLLI LRGVAILNGR KYDAGSIAML VLVALTWAVC GARWQNVLWN
YVSAIPIAVA SCLTSRELLR SDGMKSLKSR HIAVMVSGGH GLFYAARAFV LPWLGTLYGQ
GLLSVASKIT MYEGVLYSVI LPMTLLTLIR EETHGRLLQE SQTDYLTGLG NRRWFFEEGA
RVMREAGVSR PVSLLAFDLD HFKRINDRYG HETGDAVLKS FAAITRSLTG PEAMLARIGG
EEFAALLPGH DSLRAEEVGD AIVRRFAGTV LHRINDVDIR ATVSVGLAQQ SASEAPTLAD
LLASADQALY RAKSLGGNRL ELARTGVRGT ATC
|
|---|
| |