| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5639 |
|---|
| Symbol | |
|---|
| ID | 6278434 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1842974 |
|---|
| End bp | 1843993 |
|---|
| Gene Length | 1020 bp |
|---|
| Protein Length | 339 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 642616713 |
|---|
| Product | transcriptional regulator, LacI family |
|---|
| Protein accession | YP_001889356 |
|---|
| Protein GI | 187920325 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.17246 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGGCAA CACGTATGAT GATTGCGCGC CGTGCGGGCG TTAGCGTCGC CACGGTCGAT
CGTGTGTTGC GCGACGATCA GGCCGTGCGT CCGGAAACTG CAGATCGTGT CCATCTTGCG
CTGGCGGCAC TGCGCGACGA ACGGGCAAGT CGCGGTCGCC CAGCCAAGAT AAGCACGTAT
CGTGTGGCCT TCGTTTTACC TCAGGTGAAC TCGCGTTTCC TCGACCACGT CGAGCGCAAT
ATCGCTCTGT CCGCGAGCTT CTTTCGCGAG CACCGCATCA TTCCATCGTT CTACCGCTGT
GATTTCACGA TTCATCGAGA CACCATTGCT TTCGCTGAGC AGGTGATCGA CTACGACGCA
CTCGTGCTTG TGCCGCTCGA CTACCCAGCG GTCGAACGCC TTATTGAAGA TATGAGCGAT
GCGGGCGTGC CCGTTGTCAC GGTGTTCTCC GATCTGCCCG CAAGTCGCCG CGCTGCATAT
GTCGGCGTCG ATAACCGGAT TGCCGGACGC ACCGCAGGAC TTTTGATGGG TCGCTTTCTC
GGCGCGCGAC TCGGCACGGT GGCGATTTTA TCGGCCTCGT CGCGCCTGCA CGATCAACTG
GAACGACGCA CCGGCTTGTC CCAGGTGCTG GAAGAGGACT TTCGCAATCT GCGCTGGATT
GCCGAACCAG ACTTTGCCGA AGATGACGAT GGCGCAGGTC TTGCCGTGCA GGGCCTCCTT
GCACGTTACC AGGATCTGGT CGGGGTTTAT GTGACCGGCG GCGGCATCTC AGGCATCGCA
ACGGCATTGC AGGAATCGGG CGACAAGGGA CGCATCGTAC TGATCGGGCA TGAATGTACC
GCGGAGACTC GCACGCAACT GTCCGAGCGC GCGATCGACG TAATCCTCGA CCAGGATGTG
CGCGGCATCG TTCATTGGGC AGGCCTCGCC GCCATCAATT TTCTTAACGA CGTACGTGGC
GCGCTCGCCA TCCCAACGCC GGAAACCCGG ATTTATCTTC GTGAGAATGC GCATGCCTGA
|
|---|
| Protein sequence | MPATRMMIAR RAGVSVATVD RVLRDDQAVR PETADRVHLA LAALRDERAS RGRPAKISTY
RVAFVLPQVN SRFLDHVERN IALSASFFRE HRIIPSFYRC DFTIHRDTIA FAEQVIDYDA
LVLVPLDYPA VERLIEDMSD AGVPVVTVFS DLPASRRAAY VGVDNRIAGR TAGLLMGRFL
GARLGTVAIL SASSRLHDQL ERRTGLSQVL EEDFRNLRWI AEPDFAEDDD GAGLAVQGLL
ARYQDLVGVY VTGGGISGIA TALQESGDKG RIVLIGHECT AETRTQLSER AIDVILDQDV
RGIVHWAGLA AINFLNDVRG ALAIPTPETR IYLRENAHA
|
|---|
| |