Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Bphyt_5615 |
Symbol | |
ID | 6279698 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia phytofirmans PsJN |
Kingdom | Bacteria |
Replicon accession | NC_010676 |
Strand | + |
Start bp | 1818252 |
End bp | 1821431 |
Gene Length | 3180 bp |
Protein Length | 1059 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642616692 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_001889335 |
Protein GI | 187920304 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.635734 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAACGCA ATCTGCTCGT CCACCTGCTC GGACGTCTGC GCGTAGGCCG CAAGCTGCTG CTGATCTATC TGCTCGACCT GAGCGCGGTG GTGTTCATTA GCGGCATTCT GATCCACGAA AAGTACATCG CGATCGACTT CTCCGACAAG GAGTTGGTCG GCAACGCGTA TATCGCGGCC GCGCAAGACG CGCTGACCGG TTTCGCACTC GCCGGGGCCG GGCGCCAGCA AAGCGCGGCG CAATTGCAGC AGACCGCCGG CAAGCTCGCC GACGCAGAGC GCAGGTTCGG GGAGCACATG CAAAGTGCGG CACTCAATCA ACGGGTACGC GACGCGCTCC TCGCCAGCGC GTCGCCGCAT GCGGATGCCG CGACGCTCGA CGGTGGACTC GAAGCGACCC GTGCACTGGT GACACGGGTC GGTAACCAGT CGAACCTGAT TCTGGACCCC GACCTCGACA GCTACTATGC AATGTCTCTG TCGATTCTGC GCTATCCGGA ACTGCTCAGC GACGTCGACC GGATAGGCCG TCATCTCCAC GACGCCGGTG CGAAATCGCG CACTGTGCCG ATGGGCCGCG ACGAGATGCG CACCCGCTAC CTGGTACTCG AAGGGCAACT CGATGCGGTT TTACAGGGTC TGCGTTCGGA CTACGCGGAG GCCTCGGCCG CGAACGGCAC GCTGACCCGC ACGATCGGTC CGTCTATAGA ACGACTGCTC GCCGCCATCG ATTCATATCG GCGCGTGGCC GGCGCAGCGG TCGACGCCGG TGGCGACGTG CCCGAACTCG CGACGCTCGA TGCCGCCCAA CAGCGCGTGG TGATAAGCGT CAGCGACGCA TGGAGCATCA CCAGCAGTCA GCTCGAACGG CTGCTGCATG AGCGCGTGCG CGGCCTTTTT GAACGCATGT GGCTGCACCT TGGCACTGCC CTGTTCTTGC TGTGCGCGAT CCTGAGCATG GTATATGCGG TCGCCCAGCA AATCTCCCGA CCGCTGCGCG AGCTCGCGCG CGTGATGGAT ACCGTGCGCC GGACCGGCGA CCACTCATTG CGTGCAGACT GGCACAGTCA GGATGAGATT GGCCGACTCG TGCGCGGCTT TAACGACATG CTCGCGCAGC TCGGCCGCGA ACGCGACATA CAGAAGGAGC TCGCGGCAAC GGCTCGCGCG TCCGCCGCCC AATACGCGCT GGTGGAGGCG ACGCCCGTGC CGATGGTGGT CACGGCGATC CCGGGCCATG AGGTGTTGCA TGCGAACCGC CCGGCACTTG CGTGGCTCAA CGGCTGCACG GTCGACCCGT GGGGCTACGG GCTCGACTCC GAGGTCCGGG CGCGCTTTTT CCAGCAACTG TCGGACCGCG ATGCCGTCGA CGAATTCGAG GTGCGCTGGA AAGCCAGCAA CGAACCCAGC TGGGCGATGC TGTCGGCGCG AAGACTCGCC TTTCAGGGAC GTGATGCGGT ATTGACCGCA TTCACACCGA TCAACCAGAT CAAGTCGATG GAGCAGCGCC TCGAATTGTG GGGCAAGGTG TTCGAGGCAT CGTCGGAAGC CATTCTGATT CTCGACGCAC AGCGACGCCT CGTGACCGCG AACGCGTCGT TCTATCGGGC CACCGGCTAT CGCGCCGACG ATGTCGCAGG TAAGGAGCCC GCCTTCCTTA GCGGCGCGCA CGTGCAGGGC GACCTGCTCG CGGCCGTGAT CGATTCGGTG GATCGTCAGA GCGCGTGGCA TGGCGAAGCA AACGTGCGGC GGCGCGCGGG GAGCGATTAC CCGGCGTGGC TGATGATTAG CGCCGTGCGC GACCGGCGCG CGAGCCTTTC GCACTACATC TGCACGTTGA TCGACATCAC CGATCGAAAG AAGAGCGAAG CTCGCATTCA GTTCCTCGCC GAACATGACC TCCTGACCGA ATTACCGAAC CGCGCGCTGT TCATGAAGCG CCTGCGTGCG GTACTCGATC ACGCCCGCGT CGCGGATCAC CGCGTCGCCG TGCTGTTCAT CGATCTGGAC CGTTTCAAGC ACGTCAACGA TTCGCTGGGT CATCACATTG GCGACAGCCT GTTGCGCTCG GTGTCGAGGC GTCTCGTTCG GGCCGTGCGC GCCGACGATA CCGTGAGCCG CCTCAGCGGC GACGAGTTCA CGATCATCCT CAACGGCGTC AGCGGCGCGG CCGAGGTCGG CCGCACCATC GAGGACCGTC TGCTGCCGCT GATGCGTCAA CCGCATGAAC TCGATGGCAT GGCGCTGCCG GTGTCGTGCA GTGTCGGCGT CGCGCTGTTC CCCGACGATG GCGAGGACAT CGAGACGCTG ATGCAGAATG CCGATGCCGC CATGTATCAG GCCAAAGGCG CTGGCCGCAA CCTCGTCAAG TTCTTCACCC CTGACATGGC CGAACGCGCG CTTCACCGGG CGCAGCTTGA GGCGTCTTTG CGCAACGCGA TTGCGATGGA CGAGTTCCGG CTGGAGTATC AGCCGTGCAT CGACGCCCGC ACCGGCGAAC TGGTCGCCGT GGAAGGGCTG CTGCGCTGGC ACAACCCGCG GCTCGGCAAG GTGTCGCCCG CGGAATTTAT TCCGATCGCG GAAGAAAGCC GGCTGATCAT CTCGATGGGC GCGTGGGTGA TAGAACAAGC GTGCCGCCAG ATTGCGGAGT GGAACGACGA AGGCCTCGCC CCGCTACGCG TGTCGATCAA CGTGTCCGCG ATCCAGTTGC GCGACCCGAA CCTGATCGGC ATGCTCGCAA CCAGTCTCGA GCGCAATCGC GTCGCCCCCG AACGGCTCGA ACTCGAGATC ACCGAGACGG TGCTGATGGA TAGCGCGGAG CATTATGAAT CGACGGTGGC CGGCATCCGC AAGCTTGGCA TCAAGCTATC GCTCGACGAT TTCGGCGTCG GTTACTCGAG CCTCAGCTAT CTGAACCGGT TTCCGCTGGA TCGCCTCAAG ATCGACCGGG CGTTCGTGAA AGACATGCTC GACGCGCCGG CCGATCTCGC GATCATTCGC GCGATCATCG AACTCGGGCA CGAACTCGGG TTACGAGTGG TCGCGGAGGG GGTTGAGAGC GAGCATCAGG CGCAGATCCT GCGCAACATC GGTTGCGACG AGTTACAGGG TTTCCTGTTC TCCCCGTCGC TGTCGCCTGC CGATCTGGGT TCGTGGAGCA GCATGCGCAT GGTAGCGTGA
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Protein sequence | MKRNLLVHLL GRLRVGRKLL LIYLLDLSAV VFISGILIHE KYIAIDFSDK ELVGNAYIAA AQDALTGFAL AGAGRQQSAA QLQQTAGKLA DAERRFGEHM QSAALNQRVR DALLASASPH ADAATLDGGL EATRALVTRV GNQSNLILDP DLDSYYAMSL SILRYPELLS DVDRIGRHLH DAGAKSRTVP MGRDEMRTRY LVLEGQLDAV LQGLRSDYAE ASAANGTLTR TIGPSIERLL AAIDSYRRVA GAAVDAGGDV PELATLDAAQ QRVVISVSDA WSITSSQLER LLHERVRGLF ERMWLHLGTA LFLLCAILSM VYAVAQQISR PLRELARVMD TVRRTGDHSL RADWHSQDEI GRLVRGFNDM LAQLGRERDI QKELAATARA SAAQYALVEA TPVPMVVTAI PGHEVLHANR PALAWLNGCT VDPWGYGLDS EVRARFFQQL SDRDAVDEFE VRWKASNEPS WAMLSARRLA FQGRDAVLTA FTPINQIKSM EQRLELWGKV FEASSEAILI LDAQRRLVTA NASFYRATGY RADDVAGKEP AFLSGAHVQG DLLAAVIDSV DRQSAWHGEA NVRRRAGSDY PAWLMISAVR DRRASLSHYI CTLIDITDRK KSEARIQFLA EHDLLTELPN RALFMKRLRA VLDHARVADH RVAVLFIDLD RFKHVNDSLG HHIGDSLLRS VSRRLVRAVR ADDTVSRLSG DEFTIILNGV SGAAEVGRTI EDRLLPLMRQ PHELDGMALP VSCSVGVALF PDDGEDIETL MQNADAAMYQ AKGAGRNLVK FFTPDMAERA LHRAQLEASL RNAIAMDEFR LEYQPCIDAR TGELVAVEGL LRWHNPRLGK VSPAEFIPIA EESRLIISMG AWVIEQACRQ IAEWNDEGLA PLRVSINVSA IQLRDPNLIG MLATSLERNR VAPERLELEI TETVLMDSAE HYESTVAGIR KLGIKLSLDD FGVGYSSLSY LNRFPLDRLK IDRAFVKDML DAPADLAIIR AIIELGHELG LRVVAEGVES EHQAQILRNI GCDELQGFLF SPSLSPADLG SWSSMRMVA
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