| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Bphyt_5612 |
|---|
| Symbol | |
|---|
| ID | 6280092 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia phytofirmans PsJN |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010676 |
|---|
| Strand | - |
|---|
| Start bp | 1813896 |
|---|
| End bp | 1816406 |
|---|
| Gene Length | 2511 bp |
|---|
| Protein Length | 836 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 642616689 |
|---|
| Product | ATPase, P-type (transporting), HAD superfamily, subfamily IC |
|---|
| Protein accession | YP_001889332 |
|---|
| Protein GI | 187920301 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0474] Cation transport ATPase |
|---|
| TIGRFAM ID | [TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0803944 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGACGA GTTCCGTTCA ATCCGTTCCG GACATAAGCT CTGGCCACAT CGGATCGGCA
CCGCCGCTCG CGCACGCCGA GAGGAAGCGT GGACTGTCGA GCCGGCAGGT GGAGGAGTCG
CGCGCCCGCT TCGGTCGAAA CATCGTGGAC TCAAAGGTTC GCCGCACCTG GTGGCAAACG
CTGGGAGAGG GGCTCCGTGA GCCCATGTTT CTTCTACTCC TCGGCGCAAC CGGCATCTAT
TTTCTGCTTG GAGATGTGTC GGAGGCGCTC GCGCTTCTCG CGTTTGTCGC CGCAATTGTC
TTTCTGACGG TCTTTCAAAG CCATCGTACG GCGCGGGTGC TCGACTCTCT TCGCGAGCTG
TCCGCGCCCC GTGCGCAAGT ACTGCGGGAC GGGCAGCGGC AACTCGTTGC CGCCGCCGAA
CTGGTGCCGG GCGACCTGGT TTTCGTCCGG GAAGGCGCGC GTGTGCCGGC CGACGGTTCA
GTGACGGAGG CTCACGAACT GAGCGTAGAC GAGTCGCTAC TGACAGGCGA GTCCGTTTCG
GTGAGCAAGT CCGTGGCACG AGCCGATGCA CGTGCAGAGG AGGATCCTGG CGGACAGCTT
ATTTTCGGGT CGATGGTGGT GCAGGGTCAG GGGCAGATGA TCGTGACGGC GACGGGGGCG
AATACGAAGC TTGGTCGCAT TGGCAAGTCG TTGACCGGCA TTACGGAAGC CCGCTCGCCG
CTGCAACTGG AAACGAGAAC CTTCGTCAAT CGCTTTACGT TGGCCGCGAT CATACTGTGT
CTGCTGCTCG TCGTGGCCTA TCGCTTGCGC TCCGGGGAAT GGCTTCCGGG CGTGCTCGCG
GGAATCACGC TGGCCATGGG GATTCTTCCC GAAGAGATTC CGGTGATACT GACCGTTTTC
ATGGCACTTG GGGCTCGCCG AATCGCCAGT GAAGGCGTGC TGACACGCCG TATGAGCGCC
ATCGAAACGC TCGGCCAGAC CTCGGTGCTG TGCGTCGACA AGACGGGCAC ATTGACGCAA
AACCGCATGT CCGTGCGCGT GCTGTCTGCG CAAGGAAAAC GGCAGGTCAT CGATCCGACG
ACGCAACGGA TCGACGAGGC GTATCACGAA CTCATCGAGT ATCTGGTGCT CGCCAGCGAA
ATCGAACCGA TCGATCCAAT GGAGCGGGCA TTTCACGAAA CAGGCCGGGT TGAACTCGCC
GGCACCGGAC GGCTCCACGA CGACTGGTCC CTGGTTCATG AATACGCGCT GACACCGGAA
TTGCCGGCCA TGTCCCACGC ATGGCACGCG CCTGAACTCG ATCATCACGC CGTGGCCTGC
AAGGGCGCGC CAGAAGCGGT CTGTGCCTTG TGTCGTCTGG ACGAACGGGA TACGCAGACT
GTTCTTGATG AGGCGGCGCA AATGGCGTCG GGTGGACTGC GGGTGCTTGG GGTGGCCAAG
GCACGGCACT CACATTCCGG CTGGCCGGAA AAGCAGCACG ACTTCGAGTT CTCTTTCGTA
GGGCTGGCCG GGTTGCTGGA TCCGGTCCGG CCAGAGGCCG CGGGCGCTAT CGCCGCATGC
CAGGCCGCCG GCATCCGTGT GGTGATGATT ACCGGCGATT ATCCGTCGAC GGCGCGGGCT
ATTGCGACTG AAGTCGGTAT CGACGGCACG CGGATCGTGA CTGGCCAGGA AGTGGCTGCG
ATGAATGACG CGCGGCTTCG CGAGGCCATA ACGAACGTGG ACGTGTTTGC ACGTGTCAAG
CCAGAGCAAA AATTGCGGCT CGTCAATGCG TTCAGGGAAA GTGATCAGGT GGTGGCGATG
ACGGGCGACG GTGTAAACGA CGCGCCCGCG CTTAAGGCGG CGCACATCGG CATTGCGATG
GGACTGCGCG GCGCCGAAGT CGCGCGCGAG GTGGCATCGC TGGTCTTGCT GCGTGACGAC
TTCGCGCCGA TCGTGTCGGC GATCCGACTA GGAAGACATA TTTACGTCAA TCTCCTGCAG
GCAATCAGCT ATACGGTCGC TGTTCATATT CCGATGATCG CCGCAGCCAT GATTCCGGTT
TTCGTCGGCT GGCCTCCGTT GCTCGCGCCC GTTCATATCG TCTTTCTCGA GCTGATTATC
AACCCCGTCT GCTCGATCGT GTTCGAGAAC GAGCCGGAAC GCGAGAACCT GATGCATATG
CCACCGCGCC GTGCCGGCGC GCGTCTTCTG TCGAACAGCA CATTGGGAAA AGCGGCAATG
GCGGGCGCGT TAGCCGCCAT GCTGATGCTC GGTCTGTATG CAGCCTTGCT GAGCCTCAGC
TACGACCTTA CTTTCTCACG CACAGTGTCG TTCATGGCGC TCGTGGCGTG TAATGTGGCT
TTGATCTTCG TGATCCGCTT ACTTCCTCAG CCGCGGGCCT ATGCACGCGC ACGACAGCGG
AATCGCTACC TCTGGGTTGT ACTAGGTGTC GTTGGCACGG GGCTTCTGCT TCTCATGACC
GTACCCGCCC TGGCGCGGCT GTTCGGACTG GTCGCGTTGC TAAGCGCCTG A
|
|---|
| Protein sequence | MQTSSVQSVP DISSGHIGSA PPLAHAERKR GLSSRQVEES RARFGRNIVD SKVRRTWWQT
LGEGLREPMF LLLLGATGIY FLLGDVSEAL ALLAFVAAIV FLTVFQSHRT ARVLDSLREL
SAPRAQVLRD GQRQLVAAAE LVPGDLVFVR EGARVPADGS VTEAHELSVD ESLLTGESVS
VSKSVARADA RAEEDPGGQL IFGSMVVQGQ GQMIVTATGA NTKLGRIGKS LTGITEARSP
LQLETRTFVN RFTLAAIILC LLLVVAYRLR SGEWLPGVLA GITLAMGILP EEIPVILTVF
MALGARRIAS EGVLTRRMSA IETLGQTSVL CVDKTGTLTQ NRMSVRVLSA QGKRQVIDPT
TQRIDEAYHE LIEYLVLASE IEPIDPMERA FHETGRVELA GTGRLHDDWS LVHEYALTPE
LPAMSHAWHA PELDHHAVAC KGAPEAVCAL CRLDERDTQT VLDEAAQMAS GGLRVLGVAK
ARHSHSGWPE KQHDFEFSFV GLAGLLDPVR PEAAGAIAAC QAAGIRVVMI TGDYPSTARA
IATEVGIDGT RIVTGQEVAA MNDARLREAI TNVDVFARVK PEQKLRLVNA FRESDQVVAM
TGDGVNDAPA LKAAHIGIAM GLRGAEVARE VASLVLLRDD FAPIVSAIRL GRHIYVNLLQ
AISYTVAVHI PMIAAAMIPV FVGWPPLLAP VHIVFLELII NPVCSIVFEN EPERENLMHM
PPRRAGARLL SNSTLGKAAM AGALAAMLML GLYAALLSLS YDLTFSRTVS FMALVACNVA
LIFVIRLLPQ PRAYARARQR NRYLWVVLGV VGTGLLLLMT VPALARLFGL VALLSA
|
|---|
| |